sequencing-data

Wally: Visualization of aligned sequencing reads and contigs

An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.

A tool for sniffing out the differences in vari-Ants

Ultra-rapid detection of viral variants directly from sequencing data

Flexible analysis of high-content CRISPR screening

🌳 Scalable ancestry from genomic data

deepBreaks , a computational method, aims to identify important changes in association with the phenotype of interest using multi-alignment sequencing data from a population.

PhD-Level Course for Single-Molecule Sequencing Technologies

Submit sequencing data to ENA via spreadsheet templates - automatically generates XML files, handles submission of study, sample, experiment and run. Extracts accession numbers from the XML receipt

Combinatorial Library Analysis Suite v.0.4.4

Sequencing Techniques Portfolio

NanoListener: a small suite of Python scripts to create custom training datasets for modification-aware basecaller models.

Windows desktop app for downloading ENA FASTQ and GEO supplementary files.

Public absolute abundance microbial sequencing data, hosted by The Silverman Lab

R script for fast and streamlined Radiality Calculation from GPSeq data.

Repository to discuss SARS-CoV-2 sequence quality

Frontend web application for wally to visualize aligned sequencing reads

A Snakemake pipeline for copy number variant calling without normal tissue samples

Independent Julia/Agda package for sequencing-count evidence: returns proved present, absent or undecided verdicts under a noise bound, without changing or importing MetaManifold.

Julia hurdle and zero-inflated negative-binomial models for sequencing counts (hurdle_nb, zinb), cross-checked against R pscl. Pre-release: the formal proofs its spec requires do not exist yet.