rfam

Code and data for analysing the taxonomic distribution of Rfam families

Multiscale dataset of non-coding RNA structures, including sequences, secondary structures, non-canonical interactions, 3D geometrical descriptors, and sequence homology.

Rfam documentation and help hosted on ReadTheDocs

Embeddable react component for RNA sequence search.

nf-core pipeline for genome-level ncRNA annotation using Infernal

PARS is a python package for browsing and downloading files deposed in Pfam and Rfam databases (e.g. sequences, alignments, hmm). It has implemented classes dedicated to Pfam data like: PfamFamily or PfamClan. PARS is compatible with Biopython modules, but also is extended by HMMER wrapper which enables convenient usage of downloaded HMM files. …

Validation and quality control toolkit for Rfam Stockholm multiple sequence alignments

A reproducible bioinformatics pipeline for benchmarking RNA covariance models generated from MUSCLE and LocaRNA alignments using Rfam RNA families.

Comparative analysis of RNA secondary structure across 12 eukaryotic mRNAs — Master's thesis, University of Vienna

PyMOL plugin for visualizing RNA structural motifs