Ancestral character reconstruction and visualisation for rooted phylogenetic trees
A couple of tools I find indispensable for post orthomcl down-stream analysis.
One-step TNT script for maximum parsimony phylogenetic analysis https://doi.org/10.11646/zootaxa.5642.1.10
Phylogeny estimation from binary characters via Dollo parsimony
Cell lineage tree estimation via Star Homoplasy parsimony; also applicable to Camin-Sokal parsimony with binary characters
Computational Biology Assignments
Panoramic partial least squares (Π-PLS) regression for compact, interpretable multivariate prediction
UPGMA Trait-Based Phlyogenetic Tree Generator With Optional Parsimony Capabilities
www starter 🦕
SCJ small parsimony problem for weighted gene adjacencies
A Julia phylogenetics toolkit for reconstructing and comparing evolutionary trees from sequence or morphological characters, with distance and parsimony methods, bootstrap support, Newick export and tree metrics.
Tests to explore the use of the inapplicable algorithm of Brazeau, Guillerme & Smith (2019)
A Claude Code subagent that asks: do we actually need this complexity?
An efficient algorithm for parsimony-based reconstructions of the evolutionary history of individual metabolic pathways.
Implementation of the InOutParsimony algorithm for solving the Small Gain-Loss Phylogeny problem
Welcome to the master repository for gmgcode.
AI agent framework for data analysis with code execution
Connectors for parsimony — FRED, SDMX, FMP, SEC Edgar, Polymarket, and more. Each publishes as its own PyPI package.
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