Protein 3D structure prediction pipeline
RNA, mRNA, DNA, Peptide, Protein, Antibody and Complex | Folding
AIRFold Protein Structure Prediction System
De novo therapeutic peptide design pipeline using RFdiffusion and ESMFold to hallucinate NaV1.7 pain-channel blockers locally on CPU
Cost-aware protein folding inference — routes cache → AlphaFold DB → ESMFold. Never compute the same structure twice.
MutFold | Human breast cancer associated mutant protein structure prediction and alignment application
Lightweight AI drug virtual screening platform for biologic industry. Nearly 20 years of expertise in biopharma R&D, manufacturing, quality and regulatory affairs.
Unified Python library and CLI for protein structure prediction and inverse folding.
a lightweight cli wrapper around ESMFold2 for fast protein complex prediction from FASTA input.
NucleoScan — structure-guided residue-level fragment-emergence scoring with ESMFold.
Rooted, dual-method (ML + Bayesian) phylogeny of the bacterial Hfq family, with archaeal SmAP outgroup rooting and ESMFold/Foldseek structural verification
Demonstration of ESMFold2 created by me. Hope is I deploy this in tandem with Neuroscience projects, particularly in understanding the contraindications of drugs on synapses.
EpitopePred — An integrated immunoinformatics web server for automated multi-epitope vaccine engineering against viral, bacterial, protozoal, and fungal pathogens. Combines 30+ bioinformatics tools with deep learning (ESMFold, ESM-1b) and asynchronous pipeline orchestration.
ESMFold - Evolutionary-scale prediction of atomic-level protein structure with a language model
ESM-Stream: Streamlit app for Protein Structure Prediction using ESMFold, powered by deep learning
A protein sequence logo in 3D, wrapped around its own predicted structure. Amino acid letters stacked by how strongly a language model expects them, with no multiple sequence alignment anywhere.
High-throughput bio-compute engine in Rust: in-silico Deep Mutational Scanning (DMS), OCI/Podman runner, MolProbity & SASA biophysics, pure-Rust terminal 3D rasterizer, and Apache Parquet data lake exports.
Protein sequence design loop on ESMC scoring + ESMFold structure prediction (Python + CLI).
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