Issues

• Security: bundled bzip2 1.0.6 is vulnerable to CVE-2019-12900 (critical) and CVE-2016-3189

  bug
  sys-bio/roadrunner#1393 · Filter by author matthiaskoenig opened on Oct 24, 2026

• Julia bindings for roadrunner releases

  sys-bio/roadrunner#1392 · Filter by author matthiaskoenig opened on Oct 24, 2026

• Setting the initial value of the target of an initial assignment regenerates the model on every call

  sys-bio/roadrunner#1385 · Filter by author matthiaskoenig opened on Oct 22, 2026
  2

• Upgrade LLVM

  Redesign
  sys-bio/roadrunner#1370 · Filter by author luciansmith opened on Oct 16, 2026
  3

• Turn on using sparse matrices in CVODE

  sys-bio/roadrunner#1352 · Filter by author luciansmith opened on Sep 2, 2026

• There is no C API to get the number of assignment rules and their ids and types

  Quick Fix
  Feature

  sys-bio/roadrunner#1332 · Filter by author hsauro opened on Jun 18, 2026

• Python API has no getScaledElasticityIds() and getUnscaledElasticityIds()

  Quick Fix
  Feature

  sys-bio/roadrunner#1331 · Filter by author hsauro opened on Jun 18, 2026

• Nuisance warnings can't be suppressed in >=2.9.0

  sys-bio/roadrunner#1316 · Filter by author elbert5770 opened on May 1, 2026

• Allow setting absolute tolerance as vector-like things, not just list.

  sys-bio/roadrunner#1301 · Filter by author luciansmith opened on Dec 8, 2025

• Issue installing LibRoadRunner

  sys-bio/roadrunner#1280 · Filter by author WilliamIX opened on Jul 14, 2025
  7

• Revive export C code

  sys-bio/roadrunner#1273 · Filter by author luciansmith opened on Jun 27, 2025

• Create conda install

  sys-bio/roadrunner#1264 · Filter by author luciansmith opened on Mar 6, 2025
  1

• changing species initialization order prevents steady state from being reached.

  sys-bio/roadrunner#1245 · Filter by author janisshin opened on Jan 26, 2025

• Change name of 'jacobian mode' flag

  sys-bio/roadrunner#1239 · Filter by author luciansmith opened on Dec 13, 2024

• The auto bifurcation diagram seems doesn't catch all multi-steady states?

  sys-bio/roadrunner#1235 · Filter by author ZiyiiiLiu opened on Sep 11, 2024

• can roadrunner make bifurcation diagram showing Hopf Bifurcation with oscillation showing?

  sys-bio/roadrunner#1234 · Filter by author ZiyiiiLiu opened on Sep 9, 2024
  2

• M1 issue with steadystate

  sys-bio/roadrunner#1226 · Filter by author luciansmith opened on Jun 18, 2024
  5

  

• addX functions not wrapped well in Python

  sys-bio/roadrunner#1205 · Filter by author luciansmith opened on Mar 27, 2024

• Fix doc building so python-only functions make it to the docs

  documentation
  sys-bio/roadrunner#1197 · Filter by author luciansmith opened on Mar 14, 2024

• removeInitialAssignment results in many variables changing

  sys-bio/roadrunner#1195 · Filter by author dalbabur opened on Mar 11, 2024
  5

• Changing initial values should change SBML export

  sys-bio/roadrunner#1193 · Filter by author luciansmith opened on Mar 6, 2024
  1

• Update for Compatibility with MacOS 12.6.8 (Intel) and Python 3.11.5

  sys-bio/roadrunner#1167 · Filter by author AlexanderSimWS opened on Dec 3, 2023
  1

• Turning on and off conservedMoietyAnalysis doesn't reset total mass.

  sys-bio/roadrunner#1146 · Filter by author luciansmith opened on Oct 18, 2023
  5

  

• order of metabolites in stoichiometric matrix not consistent depending on where it is run

  sys-bio/roadrunner#1143 · Filter by author janisshin opened on Sep 6, 2023
  5

• Add macos arm-64 to azure build

  sys-bio/roadrunner#1141 · Filter by author luciansmith opened on Jul 26, 2023