All pull requests

Pull requests

• fix: aggregate images by multiscale labels

  #1261·Sizerta opened Sep 24, 2026·

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• build(deps): bump the actions-deps group across 1 directory with 6 updates

  dependenciesgithub_actions
  #1258·dependabot[bot] opened Sep 23, 2026Bot·

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• Require zarr 3.1.2 or newer

  #1257·Darlokt opened Sep 22, 2026·

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• Validate element-type selection when reading Zarr stores

  #1253·kayoderaheem opened Sep 18, 2026·

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• Respect value_key when aggregating image channels

  #1252·Qinzi27 opened Sep 17, 2026·

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• Fixes basic typing issues in rasterize.py

  #1247·Tomaz-Vieira opened Sep 11, 2026Collaborator·

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• build(deps): bump the pre-commit group with 4 updates

  dependenciespre_commit
  #1245·dependabot[bot] opened Sep 11, 2026Bot·

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• add markdown suffix for sphinx source backlinks

  #1200·jan-glx opened Sep 1, 2026Collaborator·

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• feat: add table_shard_size_bytes to control the zarr shard size of tables

  #1199·Tomatokeftes opened Sep 1, 2026Contributor·

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• [pre-commit.ci] pre-commit autoupdate

  #1198·pre-commit-ci[bot] opened Aug 31, 2026Bot·

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• test: document join scoping for a region absent from the query

  #1195·jan-glx opened Aug 28, 2026Collaborator·

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• NGFF v06 transformations

  #1182·Tomaz-Vieira opened Aug 19, 2026Collaborator·

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  113

• fix: write OME channel labels as strings

  #1168·stanbot8 opened Jul 25, 2026Contributor·

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• fix: support raster labels above uint16

  #1167·stanbot8 opened Jul 24, 2026Contributor·

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• feat: add opt-in rasterization tiles

  #1166·stanbot8 opened Jul 24, 2026Contributor·

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• feat(centroids): add return_area + SpatialData persist to get_centroids

  #1150·timtreis opened Jun 19, 2026Member·

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• Accept zipped zarr stores as an input for spatialdata.read_zarr(). Must also have ome-zarr-py ZarrLocation changes.

  #1141·pennycuda opened Jun 3, 2026·

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• Split SpatialData objects via deconcatenate()

  #1124·LucaMarconato opened May 11, 2026Member·

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• feat: generalize Zarr I/O in spatialdata to local and add remote (fsspec / UPath) backends

  remote ☁️
  #1107·selmanozleyen opened Apr 17, 2026Member·

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• Support sharding through config and raster_write_kwargs

  #1106·melonora opened Apr 14, 2026Collaborator·

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• feat: Add lazy table loading via anndata.experimental.read_lazy

  #1055·Tomatokeftes opened Jan 27, 2026Contributor·

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• Local cloud

  remote ☁️
  #999·sophiamaedler opened Oct 22, 2025·

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• add remote support

  remote ☁️
  #971·melonora opened Aug 20, 2025Collaborator·

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  3