Implementation of Transition Path Theory for:
- stationary Markov chains (pytpt/stationary.py),
- for periodically varying Markov chains (pytpt/periodic.py),
- for time-inhomogenous Markov chains over finite time intervals (pytpt/finite.py).
Based on: Helfmann, L., Ribera Borrell, E., Schuette, C., & Koltai, P. Extending Transition Path Theory: Periodically Driven and Finite-Time Dynamics. Journal of Nonlinear Science. 2020.
Install the package using pip install pytpt.
In examples/TPT_3well_notebook.ipynb we show how to use the package for studying transitions in an triple well energy landscape.