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Achievement: YOLOAchievement: Pull SharkAchievement: Arctic Code Vault Contributor

Achievements

Achievement: YOLOAchievement: Pull SharkAchievement: Arctic Code Vault Contributor

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nsangani/README.md

Hi, I'm Neel Sangani

  • I’m currently working on benchmarking CNV callers and detecting variants in sEOAD cohort with interest to identify common and different variants with respective to LOAD.

  • I have worked with MRI data to assess the progression of dementia in mild cognitive impaired patients'.

  • I have background in building NGS protein-RNA interaction pipeline, named POP-seq.

  • I have worked on ChIP-seq, ATAC-seq, RNA-seq, and CLIP-seq projects.

  • How to reach me: nsangani@iu.edu

  • Pronouns: he/him/his

  • Fun fact: I have visited more than 10 national parks. Ask me which ones!!

  • Keywords: sEOAD, sporadic Early Onset Alzheimer's Disease; LOAD, Late Onset AD; NGS, Next Generation Sequencing; POP-seq, Protein Occupancy Profile Sequencing.

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  1. ADNI_EOAD ADNI_EOAD Public

    FreeSurfer-based structural MRI analysis and QC pipeline for the ADNI Early-Onset AD cohort

    R

  2. Motif-Mining Motif-Mining Public

    Script to preprocess CLIP-seq experiment from ENCODE

    Python

  3. POP-seq POP-seq Public

    Protein Occupancy Profile Sequencing

  4. gc-tools gc-tools Public

    Python tool for computing GC content from FASTA sequences

    Python

  5. RNAseq RNAseq Public

    RNAseq Tutorial and various RNAseq research project scripts and presentations.

    CSS

  6. workshop_2026 workshop_2026 Public

    Git, GitHub & Copilot essentials workshop materials