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Nextstrain

Real-time tracking of pathogen evolution

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  1. ncov ncov Public

    Nextstrain build for SARS-CoV-2

    Python 1.4k 408

  2. augur augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 279 136

  3. auspice auspice Public

    Web app for visualizing pathogen evolution

    JavaScript 312 171

Repositories

Showing 10 of 104 repositories
  • measles Public

    Nextstrain build for measles virus

    nextstrain/measles's past year of commit activity
    Python 4 9 7 3 Updated Sep 18, 2026
  • augur Public

    Pipeline components for real-time phylodynamic analysis

    nextstrain/augur's past year of commit activity
    Python 279 AGPL-3.0 136 230 (1 issue needs help) 39 Updated Sep 18, 2026
  • seasonal-flu Public

    Scripts. config, and snakefiles for seasonal-flu nextstrain builds

    nextstrain/seasonal-flu's past year of commit activity
    Python 64 34 27 9 Updated Sep 18, 2026
  • rsv Public

    Workflow for RSV analyses on Nextstrain.org

    nextstrain/rsv's past year of commit activity
    Python 11 7 10 4 Updated Sep 18, 2026
  • newcastle-disease-virus Public
    nextstrain/newcastle-disease-virus's past year of commit activity
    Python 0 0 0 0 Updated Sep 18, 2026
  • auspice Public

    Web app for visualizing pathogen evolution

    nextstrain/auspice's past year of commit activity
    JavaScript 312 AGPL-3.0 171 250 (4 issues need help) 40 Updated Sep 18, 2026
  • chikv Public

    Chikungunya virus workflows

    nextstrain/chikv's past year of commit activity
    Python 1 0 0 0 Updated Sep 18, 2026
  • zika Public

    Nextstrain build for Zika virus

    nextstrain/zika's past year of commit activity
    Python 12 11 5 3 Updated Sep 18, 2026
  • oropouche Public

    Oropouche Nextstrain build

    nextstrain/oropouche's past year of commit activity
    Python 2 2 0 0 Updated Sep 18, 2026
  • rubella Public

    Nextstrain build for rubella virus

    nextstrain/rubella's past year of commit activity
    Python 2 2 3 2 Updated Sep 18, 2026
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