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RagTag Version: v2.1.0

Welcome to the RagTag docs! RagTag is a collection of software tools for scaffolding and improving modern genome assemblies. Tasks include:

• Homology-based misassembly correction
• Homology-based assembly scaffolding and patching
• Scaffold merging

Ragtag also provides command line utilities for working with common genome assembly file formats.

Please use the sidebar to find detailed documentation on specific topics.