Issues

• Installation Errors: Needed Help Please :-)

  lutteropp/NetRAX#88 · Filter by author bingli8899 opened on Nov 13, 2024
  1

• Run-time error: help needed

  lutteropp/NetRAX#87 · Filter by author yufengwudcs opened on Feb 16, 2023
  3

• Trouble with options --max_reticulations and --brlen

  bug
  lutteropp/NetRAX#86 · Filter by author max-hill opened on Jul 31, 2022
  2

  

• Detailed Future Work Ideas

  lutteropp/NetRAX#85 · Filter by author lutteropp opened on Aug 20, 2021
  1

• Noncritical bug in deciding how often to repeat nontopology optimization

  lutteropp/NetRAX#84 · Filter by author lutteropp opened on Aug 20, 2021

• Comparison with PhyLiNC, PhyloDAG, SNAQ, PhyloNET MPL, and PhyloNET ML on simulated data

  lutteropp/NetRAX#83 · Filter by author lutteropp opened on Aug 8, 2021
  34

• Snakes Empirical Dataset

  lutteropp/NetRAX#82 · Filter by author lutteropp opened on Aug 8, 2021
  18

• Simulated experiments for paper, result files

  lutteropp/NetRAX#81 · Filter by author lutteropp opened on Jun 22, 2021
  9

• Idea for a fast, CLV-based network pseudolikelihood

  lutteropp/NetRAX#60 · Filter by author lutteropp opened on Apr 29, 2021
  5

• Speed up ranking of candidates

  lutteropp/NetRAX#53 · Filter by author lutteropp opened on Apr 5, 2021
  2

• Derivative of Network Loglikelihood for brlen optimization

  lutteropp/NetRAX#49 · Filter by author lutteropp opened on Mar 14, 2021
  44

• Empirical dataset

  lutteropp/NetRAX#48 · Filter by author lutteropp opened on Feb 28, 2021
  5

• A short observation about per-displayed-tree-clvs

  lutteropp/NetRAX#47 · Filter by author lutteropp opened on Feb 24, 2021
  10

• New experimental setup

  lutteropp/NetRAX#46 · Filter by author lutteropp opened on Feb 17, 2021
  28

• Unrooted softwired distance

  lutteropp/NetRAX#45 · Filter by author lutteropp opened on Feb 15, 2021
  9

• [for later, just curious] Question about Branch Length Optimization

  lutteropp/NetRAX#43 · Filter by author lutteropp opened on Feb 10, 2021
  48

• New experimental results

  lutteropp/NetRAX#42 · Filter by author lutteropp opened on Feb 4, 2021
  19

• [for later, just curious] Question about Ancestral State Reconstruction

  lutteropp/NetRAX#41 · Filter by author lutteropp opened on Feb 4, 2021
  10

• Should we exclude datasets where the simulated network has worse BIC than the raxml-ng best tree?

  lutteropp/NetRAX#40 · Filter by author lutteropp opened on Jan 17, 2021
  3

• When and in which order optimize reticulation probs, branch lengths, and model parameters?

  lutteropp/NetRAX#37 · Filter by author lutteropp opened on Jan 11, 2021
  2

• Implement Network Checkpointing

  lutteropp/NetRAX#35 · Filter by author lutteropp opened on Dec 17, 2020

• Can the current horizontal moves fix a badly placed reticulation?

  lutteropp/NetRAX#34 · Filter by author lutteropp opened on Dec 17, 2020
  8

• Observation: The number of reticulations depends on the chosen brlen linkage mode (and maybe also on the likelihood model)

  lutteropp/NetRAX#33 · Filter by author lutteropp opened on Dec 17, 2020
  7

• Parallelize NetRAX

  lutteropp/NetRAX#31 · Filter by author lutteropp opened on Dec 8, 2020
  1

• Switch to Search in Waves

  lutteropp/NetRAX#30 · Filter by author lutteropp opened on Dec 8, 2020
  9