uHEAT

R code for analysis presented in the uHEAT manuscript

Name		Name	Last commit message	Last commit date
01.Metadata.Rmd		01.Metadata.Rmd
02.Medi_v2.Rmd		02.Medi_v2.Rmd
03.CRPCholCalpro.Rmd		03.CRPCholCalpro.Rmd
04.Metabolomics.Rmd		04.Metabolomics.Rmd
05.Somalogic.Rmd		05.Somalogic.Rmd
06a.Metagenomics.Diversity.Rmd		06a.Metagenomics.Diversity.Rmd
06b.Metagenomics.Maaslin.Rmd		06b.Metagenomics.Maaslin.Rmd
06b.Metagenomics.PlotsOnly.Rmd		06b.Metagenomics.PlotsOnly.Rmd
07.RNAMetadata.Rmd		07.RNAMetadata.Rmd
07a.Transcriptomics.Diversity.Rmd		07a.Transcriptomics.Diversity.Rmd
07b.Transcriptomics.Maaslin.Rmd		07b.Transcriptomics.Maaslin.Rmd
07b.Transcriptomics.PlotsOnly.Rmd		07b.Transcriptomics.PlotsOnly.Rmd
08.Waltera.Rmd		08.Waltera.Rmd
09.OrganoidsPBMCs.Rmd		09.OrganoidsPBMCs.Rmd
10.TLRs.ELISAs.Rmd		10.TLRs.ELISAs.Rmd
11.GrowthRatesCOPTR.Rmd		11.GrowthRatesCOPTR.Rmd
12.StrainAnalysis.Rmd		12.StrainAnalysis.Rmd
13.MaierLabGrowthCurves.Rmd		13.MaierLabGrowthCurves.Rmd
14.Btheta.Pcopri.RNAseq.Rmd		14.Btheta.Pcopri.RNAseq.Rmd
15.Mouse.Rmd		15.Mouse.Rmd
17.Flagellome.Plotting.Rmd		17.Flagellome.Plotting.Rmd
19.MouseFMT_taxa.Rmd		19.MouseFMT_taxa.Rmd
20.MouseSPF_taxa.Rmd		20.MouseSPF_taxa.Rmd
21.CHILD_analysis.Rmd		21.CHILD_analysis.Rmd
22.ChassaingBioreactors.Rmd		22.ChassaingBioreactors.Rmd
DNA.Maaslin.Executable.R		DNA.Maaslin.Executable.R
DNAmetadata.R		DNAmetadata.R
Metabo.Maaslin.Executable.R		Metabo.Maaslin.Executable.R
README.md		README.md
RNA.Maaslin.Executable.R		RNA.Maaslin.Executable.R
RNAmetadata.R		RNAmetadata.R
barplot_colours.R		barplot_colours.R

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