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@legumeinfo

Legume Information System

The Legume Information System (LIS) is a USDA-supported project to collect, curate and distribute legume genomic and genetic data.

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  1. datastore-issues datastore-issues Public

    mostly for issues pertaining to the content of the legumeinfo datastore; may also relate to characteristics of its user interface or managing the mirroring process to the legfed instance

    1

  2. mine-issues mine-issues Public

    Report ALL issues on LIS mines here! Regardless of which mine you found it on!

    2

  3. datastore-specifications datastore-specifications Public

    Specifications for directory naming, file naming, file contents in the LIS datastore

    Shell 3

  4. jekyll-legumeinfo jekyll-legumeinfo Public

    legumeinfo.org built with Jekyll and served on GitHub Pages

    HTML 4 1

  5. datastore-metadata datastore-metadata Public

    All the LIS Datastore YAML files under one roof.

    1

  6. jekyll-theme-legumeinfo jekyll-theme-legumeinfo Public

    A Jekyll theme for the Legume Information System and related biodata websites

    JavaScript 1 1

Repositories

Showing 10 of 125 repositories
  • Optimized_AHRD Public

    An optimized Nextflow pipeline to run AHRD

    legumeinfo/Optimized_AHRD's past year of commit activity
    Nextflow 1 Apache-2.0 0 4 0 Updated Oct 4, 2026
  • website-ui-specs Public

    User interface specification of components built for the Jekyll sites.

    legumeinfo/website-ui-specs's past year of commit activity
    Python 0 Apache-2.0 0 1 0 Updated Oct 2, 2026
  • gene-function-registry Public

    A set of records (pages) for collecting information about gene function in a human- and machine-readable format.

    legumeinfo/gene-function-registry's past year of commit activity
    Perl 2 2 1 1 Updated Oct 1, 2026
  • divbrowse Public Forked from IPK-BIT/divbrowse

    A web application for interactive visualization and exploratory data analysis of variant call matrices

    legumeinfo/divbrowse's past year of commit activity
    Svelte 0 MIT 4 0 0 Updated Sep 30, 2026
  • datastore-specifications Public

    Specifications for directory naming, file naming, file contents in the LIS datastore

    legumeinfo/datastore-specifications's past year of commit activity
    Shell 3 0 15 0 Updated Sep 30, 2026
  • sven-documentation Public
    legumeinfo/sven-documentation's past year of commit activity
    0 0 0 0 Updated Sep 29, 2026
  • ShinyCell2 Public Forked from the-ouyang-lab/ShinyCell2

    ShinyCell2 is a lightweight R package for building interactive, shareable apps to explore single-cell multi-omics, scATAC-seq and spatial transcriptomics data with customizable, publication-ready visualizations.

    legumeinfo/ShinyCell2's past year of commit activity
    R 0 GPL-3.0 19 3 0 Updated Sep 29, 2026
  • ShinyCell Public Forked from SGDDNB/ShinyCell

    Shiny Interactive Web Apps for Single-Cell Data

    legumeinfo/ShinyCell's past year of commit activity
    R 0 GPL-3.0 70 0 0 Updated Sep 28, 2026
  • microservices Public

    A collection of microservices developed and maintained by the Legume Information System

    legumeinfo/microservices's past year of commit activity
    Python 3 Apache-2.0 2 18 68 Updated Sep 28, 2026
  • DSCensor Public

    Process LIS Datastore and Provide Web Facing RESTFUL API

    legumeinfo/DSCensor's past year of commit activity
    Python 0 Apache-2.0 0 2 1 Updated Sep 28, 2026
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