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@kusterlab

Kuster Lab

The Kuster Lab comprises an international research team with a focus on proteomics, chemical biology and biomarker discovery

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  1. prosit prosit Public archive

    Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful for your research, please cite "Gessulat, Schmidt et al. 2019"…

    Python 91 45

  2. SIMSI-Transfer SIMSI-Transfer Public

    Similarity-based Isobaric MS2 Identification Transfer

    Python 3 4

Repositories

Showing 10 of 33 repositories
  • SALT Public

    A mass-spectrometry analysis pipeline for identifying the RNA moiety of peptide-RNA crosslinks (Sequential Analysis of peptide-xLinked nucleoTides).

    kusterlab/SALT's past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Sep 21, 2026
  • topas-pipeline Public

    Automated (phospho)proteomics processing pipeline for large patient cohorts providing cohort as well as patient-specific insights.

    kusterlab/topas-pipeline's past year of commit activity
    Python 1 Apache-2.0 1 3 0 Updated Sep 9, 2026
  • picked_group_fdr Public

    Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments

    kusterlab/picked_group_fdr's past year of commit activity
    Jupyter Notebook 14 Apache-2.0 5 4 0 Updated Aug 20, 2026
  • SIMSI-Transfer Public

    Similarity-based Isobaric MS2 Identification Transfer

    kusterlab/SIMSI-Transfer's past year of commit activity
    Python 3 Apache-2.0 4 9 0 Updated Jul 24, 2026
  • topas-portal Public

    Exploratory web-based tool for clinical proteomics TOPAS platform

    kusterlab/topas-portal's past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Jul 20, 2026
  • topas-manuscript-figures Public

    Data analysis and plotting scripts for the TOPAS manuscripts.

    kusterlab/topas-manuscript-figures's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jul 14, 2026
  • psite_annotation Public

    Python module for annotating a pandas dataframe with phosphosites, e.g. PhosphoSitePlus annotations, kinase-substrate relations, domain information, etc.

    kusterlab/psite_annotation's past year of commit activity
    Python 4 Apache-2.0 0 3 0 Updated Jul 2, 2026
  • astral_mcp Public
    kusterlab/astral_mcp's past year of commit activity
    Python 0 0 0 0 Updated May 26, 2026
  • icorr Public

    Identity correlation coefficient

    kusterlab/icorr's past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Apr 7, 2026
  • biowc-pathwaygraph Public

    Interactive Visualization of Signaling Pathways

    kusterlab/biowc-pathwaygraph's past year of commit activity
    TypeScript 3 Apache-2.0 0 0 1 Updated Mar 16, 2026
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