Issues

• Failing test: test_merge_and_average fails with a TypeError with pandas 2.0.3

  guma44/GEOparse#84 · Filter by author olp-cs opened on Jul 16, 2024

• UnboundLocalError when GSE non-existent

  guma44/GEOparse#82 · Filter by author jonasfreimuth opened on Sep 26, 2023
  1

• download fails because of content-length mismatch when content-encoding=gzip

  guma44/GEOparse#80 · Filter by author vttrifonov opened on Jan 7, 2022
  1

• Summary GSM metadata table

  guma44/GEOparse#79 · Filter by author RemyLau opened on Dec 2, 2021

• Skip conversion to fastq if existing

  guma44/GEOparse#78 · Filter by author hschult opened on Oct 8, 2021

• Suggestion for an improvement of the GEOparse.utils.smart_open() function

  guma44/GEOparse#76 · Filter by author abysslover opened on Sep 23, 2021

• Suggestion for an improvement of the GEOparse.__parse_entry() function

  guma44/GEOparse#75 · Filter by author abysslover opened on Sep 23, 2021

• Phenotype data does not use pandas dtype inference

  guma44/GEOparse#74 · Filter by author hardingnj opened on Sep 22, 2021
  1

• GEOparse not downloading a supplementary file for a GSE

  guma44/GEOparse#72 · Filter by author grisaitis opened on Jun 15, 2021

• DtypeWarning: Columns (7) have mixed types.

  guma44/GEOparse#70 · Filter by author CholoTook opened on May 17, 2021
  4

• Am I doin it rong?

  guma44/GEOparse#69 · Filter by author CholoTook opened on May 17, 2021
  1

• UnboundLocalError while trying the example from documentation

  guma44/GEOparse#65 · Filter by author sowmyamanojna opened on Dec 10, 2020
  2

• cannot download and parse GEO files

  guma44/GEOparse#62 · Filter by author Mengflz opened on Jul 10, 2020
  11

• Warning if fastq-dump is not installed or on $PATH

  guma44/GEOparse#58 · Filter by author JohnWSteill opened on Apr 9, 2019
  1

• Missing File Error when GEO is Down

  bugenhancement
  guma44/GEOparse#51 · Filter by author Miserlou opened on Jan 29, 2019
  1

• showing all SRRs for a particular GSM

  possible enhancement
  guma44/GEOparse#42 · Filter by author golobor opened on Apr 11, 2018
  1

• Remove downloaded archive // Cleanup

  enhancement
  guma44/GEOparse#41 · Filter by author Miserlou opened on Apr 4, 2018
  1

• Download MINiML

  enhancement
  guma44/GEOparse#40 · Filter by author Miserlou opened on Apr 3, 2018
  1

• SRR type now known

  guma44/GEOparse#37 · Filter by author antonkulaga opened on Jan 23, 2018
  1

• Some samples don't have table data!

  bug
  guma44/GEOparse#36 · Filter by author halioui opened on Jan 11, 2018
  6

• Possibility to download all GEO data locally.

  enhancement
  guma44/GEOparse#28 · Filter by author bgriffen opened on Jul 15, 2017
  1

• check for converted sra-s

  enhancement
  guma44/GEOparse#27 · Filter by author antonkulaga opened on Jun 27, 2017
  1