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@fiberseq

fiberseq

README.md

fiberseq

This is an organization for tools used in processing Fiber-seq data. Please see the book for documentation on processing Fiber-seq data.

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  1. fibertools-rs fibertools-rs Public

    Tools for fiberseq data written in rust.

    Rust 73 10

  2. FIRE FIRE Public

    A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.

    Python 29 8

  3. fiberseq-qc fiberseq-qc Public

    QC plots and statistics

    Shell 12 2

  4. fiberseq.github.io fiberseq.github.io Public

    Source for "The computational guide to Fiber-seq"

    Python 7 3

  5. FiberHMM FiberHMM Public

    HMM-based footprint caller for single molecule footprinting data

    Python 11 3

Repositories

Showing 10 of 13 repositories
  • fibertools-rs Public

    Tools for fiberseq data written in rust.

    fiberseq/fibertools-rs's past year of commit activity
    Rust 73 10 8 3 Updated Oct 17, 2026
  • FiberBrowser Public

    Genome browser and analysis workbench for single-molecule chromatin footprinting (Fiber-seq, DAF-seq)

    fiberseq/FiberBrowser's past year of commit activity
    TypeScript 2 MIT 0 0 0 Updated Oct 17, 2026
  • FiberHMM Public

    HMM-based footprint caller for single molecule footprinting data

    fiberseq/FiberHMM's past year of commit activity
    Python 11 MIT 3 2 1 Updated Oct 16, 2026
  • The-Guide-for-DAF-seq Public

    The guide to DAF-seq: wet lab protocols and computational best practices

    fiberseq/The-Guide-for-DAF-seq's past year of commit activity
    Handlebars 3 3 0 0 Updated Oct 6, 2026
  • bonFIRE Public
    fiberseq/bonFIRE's past year of commit activity
    Python 7 MIT 0 2 0 Updated Sep 29, 2026
  • UCSC-Fiber-seq-hub Public
    fiberseq/UCSC-Fiber-seq-hub's past year of commit activity
    Python 2 0 1 0 Updated Sep 4, 2026
  • fiberseq.github.io Public

    Source for "The computational guide to Fiber-seq"

    fiberseq/fiberseq.github.io's past year of commit activity
    Python 7 3 0 0 Updated Aug 29, 2026
  • fiberseq-qc Public

    QC plots and statistics

    fiberseq/fiberseq-qc's past year of commit activity
    Shell 12 GPL-3.0 2 0 0 Updated Aug 19, 2026
  • FIRE Public

    A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.

    fiberseq/FIRE's past year of commit activity
    Python 29 MIT 8 12 1 Updated Aug 15, 2026
  • Molecular-annotation-spec Public
    fiberseq/Molecular-annotation-spec's past year of commit activity
    Python 6 MIT 1 2 0 Updated Aug 3, 2026
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