Issues

• ExtractHLAread.sh fails when the input file is in .cram format.

  deepomicslab/SpecHLA#70 · Filter by author pjgreer opened on Mar 5, 2026
  3

• HLA Allele and LoH Calling on WXS Tumors

  deepomicslab/SpecHLA#57 · Filter by author andrewgalbraith21 opened on Jul 29, 2025
  1

• HLA typing quality score evaluation

  deepomicslab/SpecHLA#56 · Filter by author gunyorka opened on Jun 10, 2025
  3

• about extract fq form hg38 with alt contig or hg38 without alt contig

  deepomicslab/SpecHLA#52 · Filter by author LI-DINGYANG opened on Mar 12, 2025
  1

• update database

  deepomicslab/SpecHLA#50 · Filter by author DayTimeMouse opened on Feb 13, 2025
  3

• ERROR: Too many blocks, the phasing process must be wrong.

  deepomicslab/SpecHLA#47 · Filter by author maudeardin opened on Jan 9, 2025
  24

• Question about minimap2 parameters in long_read_typing.py

  deepomicslab/SpecHLA#28 · Filter by author karoliinas opened on Mar 26, 2024
  15

• Novoalign

  deepomicslab/SpecHLA#18 · Filter by author bsb2014 opened on Dec 5, 2023
  1