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Computational Medicine Lab

Computational Medicine Group based in London (QMUL PHURI) and Berlin (BIH@Charité)
README.md

Computational Medicine Group

This is the GitHub organization of the Computational Medicine Group based in the QMUL PHURI (London) and the BIH@Charité (Berlin).

For recent results and studies please visit www.omicscience.org.

Popular repositories Loading

  1. sparse-proteomic-prediction-of-common-and-rare-diseases sparse-proteomic-prediction-of-common-and-rare-diseases Public

    This repository contains code associated with the study "Proteomic signatures improve risk predictions for common and rare diseases" (DOI pending) The provided scripts are not designed to work out …

    R 20 5

  2. scallop-ukbb-ma scallop-ukbb-ma Public

    This repository contains code associated with the study "Multi-cohort proteogenomic analyses reveal genetic effects across the proteome and diseasome". The provided scripts are not designed to work…

    R 7 1

  3. r-prodente r-prodente Public

    Companion R package for a publication to run enrichment analysis across protein determining factors

    R 5

  4. obesity-prognosis obesity-prognosis Public

    This repository contains the analysis code accompanying the paper (XXX) (unpublished).

    R 5 3

  5. olink-fasting-study olink-fasting-study Public

    R 4

  6. gwascatftp gwascatftp Public

    Forked from cfbeuchel/gwascatftp

    R package to access GWAS Catalog FTP data

    R 4

Repositories

Showing 10 of 29 repositories
  • r-ofhelper Public

    Utility R package for the Our Future Health DNAnexus Trusted Research Environment

    comp-med/r-ofhelper's past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Sep 22, 2026
  • nf-munge-sumstats Public

    Nextflow pipeline to download and format (i.e. munge) GWAS summary statistics

    comp-med/nf-munge-sumstats's past year of commit activity
    Nextflow 0 0 2 0 Updated Sep 18, 2026
  • nf-download-sumstats Public

    Nextflow pipeline for downloading raw GWAS summary statistics to be then processed using `nf-munge-sumstats`

    comp-med/nf-download-sumstats's past year of commit activity
    Nextflow 0 0 0 0 Updated Sep 16, 2026
  • JDCSP_sampsize Public

    Sample size calculation for a predictive T2D complication model.

    comp-med/JDCSP_sampsize's past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Aug 31, 2026
  • delphi-2m-gwas Public

    Analysis code for Zeng et al. 2026

    comp-med/delphi-2m-gwas's past year of commit activity
    R 0 MIT 0 0 0 Updated Aug 27, 2026
  • olink-ogtt Public

    Scripts for analysis of Olink OGTT study.

    comp-med/olink-ogtt's past year of commit activity
    R 0 0 0 0 Updated Jul 31, 2026
  • nf-template Public template

    Template directory for Nextflow pipelines providing basic files and directories when setting up a new workflow

    comp-med/nf-template's past year of commit activity
    Nextflow 0 0 0 0 Updated Jul 21, 2026
  • scallop-ukbb-ma Public

    This repository contains code associated with the study "Multi-cohort proteogenomic analyses reveal genetic effects across the proteome and diseasome". The provided scripts are not designed to work out of the box, but rather illustrate the main steps done for each of the analysis performed.

    comp-med/scallop-ukbb-ma's past year of commit activity
    R 7 GPL-3.0 1 0 0 Updated Jul 14, 2026
  • seer-pqtl-elgh Public

    Analysis code for Pietzner et al. Nature Genetics 2026

    comp-med/seer-pqtl-elgh's past year of commit activity
    R 2 0 0 0 Updated May 6, 2026
  • smap Public

    Summary Statistics Manipulation and Processing

    comp-med/smap's past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Mar 26, 2026
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