All pull requests

Pull requests

• Scheduled monthly dependency update for October

  #458·pyup-bot opened Oct 1, 2026Collaborator·

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• Add Garuds G gwss statistics

  #430·sanjaynagi opened Oct 8, 2024·

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• Add projection of samples with missing variants in PCA space

  #428·maxibor opened Sep 24, 2024·

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• Bump actions/download-artifact from 3 to 4.1.7 in /.github/workflows

  dependenciesgithub_actions
  #423·dependabot[bot] opened Sep 3, 2024Bot·

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• Support Python 3.13

  #421·alimanfoo opened Sep 1, 2024Contributor·

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• Add check for gnw with shape[0] of 1 ref issue 337

  #338·hardingnj opened Aug 19, 2020Collaborator·

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• Heterozygosity Blue

  #335·timothymillar opened Aug 11, 2020Contributor·

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• Add a function for reading a fasta into a dict of numpy arrays

  #333·andrewgwalker opened Jul 28, 2020·

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• Fixed Issue #271: Added pathlib.Path support for functions taking a filepath

  #332·smbadiwe opened Jul 28, 2020·

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• Write from Zarr to vcf

  #299·giang-nghg opened Jan 29, 2020·

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• implement tabix region query natively in python

  #297·yangmqglobe opened Jan 7, 2020·

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• Add 3 functions to simulate genotypes/allele counts for quick protyping

  #281·hardingnj opened Jul 23, 2019Collaborator·

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• gametic heterozygosity_observed

  #279·timothymillar opened Jul 18, 2019Contributor·

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• Fix for floating point bug in heterozygosity_expected #274

  #275·timothymillar opened Jul 10, 2019Contributor·

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• removal of hmmlearn in favour of pomegranate

  #264·hardingnj opened May 14, 2019Collaborator·

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• vcf_to_dataframe

  #252·yakkoroma opened Jan 12, 2019·

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