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  1. montage-blend-and-convert montage-blend-and-convert Public

    Blends SerialEM montages with IMOD and writes calibrated pyramidal OME-TIFF, plus BigDataViewer-compatible HDF5 and reduced-resolution derivatives for very large montages. GUI and standalone Window…

    Python

  2. cell-segmentation-workflow cell-segmentation-workflow Public

    Cellpose-based pipeline for cell counting and marker co-localisation in multi-channel confocal .czi images, exporting CSV tables and ImageJ-compatible ROI sets.

    Jupyter Notebook

  3. opent opent Public

    ImageJ Macro

  4. agendo_inactive_users_scanner agendo_inactive_users_scanner Public

    Jupyter Notebook

  5. OpenSpin OpenSpin Public

    Forked from hmmpereira/OpenSpin

    Java

  6. photothermal-therapy-simulation photothermal-therapy-simulation Public

    Monte Carlo and heat transfer modeling for gold nanoparticle-enhanced photothermal therapy (PhD research UNL 2020)

    MATLAB