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JacobBowie/README.md

Jacob Bowie, PhD

Visiting Assistant Professor of Exercise Science in the Department of Kinesiology at the University of Connecticut, with research in the Human Performance Laboratory and the Korey Stringer Institute. I work on statistical analysis and machine learning for human physiology research: wearable sensor time-series, hierarchical Bayesian and mixed-effects modeling of within-person variability, and reproducible analysis pipelines. Marine Corps veteran.

Portfolio: jacobbowie.com · ORCID: 0000-0002-6055-8220

Selected publication

Bowie JS et al. Heat tolerance classification criteria require population-specific thresholds for accurate assessment of acclimation state in adults. Physiological Reports (2026). doi.org/10.14814/phy2.70745

Current work

  • Bayesian hierarchical fitness-fatigue modeling against an open resistance-training cohort.
  • rtSD Explorer: an interactive system-dynamics model of resistance-training adaptation (MEDv4) with a seven-test physiological-plausibility validator, running in the browser via marimo WASM. Live explorer.
  • literature-pipeline: open-source biomedical paper acquisition + citation-graph snowballing toolkit. Cascades Unpaywall to PubMed Central to preprint mirrors; indexes in DuckDB; includes a MathML-to-LaTeX rendering pass for JATS XML.
  • The Banister Constellation: a 175-paper citation graph of fifty years of fitness-fatigue model literature. Interactive viewer.
  • Surface-EMG fatigue dynamics during knee extension to failure (manuscript in preparation).

Open to

Research partnerships, and longer-term research and industry roles at the intersection of applied ML, wearables, and human physiology. Email: jacob.bowie2 at gmail.

What's here

Public repositories on this profile are work-in-progress excerpts from larger private research projects. Case studies, reproducible analysis pipelines, and reviewer-ready code are in active migration from internal repositories. The portfolio site is the up-to-date front door.

Popular repositories Loading

  1. ATHENA_MHP ATHENA_MHP Public

    Analysis of metabolic heat production

    R

  2. jacobbowie-site jacobbowie-site Public

    Source for jacobbowie.com: research portfolio of Jacob Bowie, PhD. Statistical analysis and machine learning for human physiology research.

    SCSS

  3. marimo-unlearning marimo-unlearning Public

    Interactive marimo walkthrough of Eldan & Russinovich (2023) — Who's Harry Potter? Approximate Unlearning in LLMs. Edge surgery on the model's knowledge graph, runs in your browser via Pyodide.

    Python

  4. Outlook-Classic-MCP Outlook-Classic-MCP Public

    Forked from anasahmed07/Outlook-Classic-MCP

    Local MCP server that exposes classic Outlook desktop (mail, calendar, contacts, tasks, rules) to Claude and other MCP clients via COM. No Azure app, no Graph API, no OAuth.

    Python

  5. JacobBowie JacobBowie Public

    Profile README

  6. rtsd rtsd Public

    rtSD Explorer — interactive system-dynamics model of resistance-training adaptation (MEDv4). Shiny + marimo WASM + 7-test physiological-plausibility validator. Implements the GET-PAID framework.

    R