IDEEL - Infectious Disease Epidemiology and Ecology Lab

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1. vcfdo vcfdo Public

   Some tools for processing and annotating VCF files, with focus on Plasmodium spp

   Python 7 4

2. NGS_Align_QC_Pipelines NGS_Align_QC_Pipelines Public

   IDEEL pipelines for next-generation sequence quality control and analysis

   Python 4 1

3. nanopore-pipelines nanopore-pipelines Public

   Scripts and pipelines for analyzing Oxford Nanopore long-read data

   Shell 4 3

4. vcfRmanip vcfRmanip Public

   Various interactive tools for wrangling vcf data with a focus on malaria (dependent on vcfR).

   R 2 1

5. hbv_hover hbv_hover Public

   Analysis of households and individuals enrolled in HOVER-HBV study in Kinshasa, DRC

   R 1 1

6. tpallidum_genomics tpallidum_genomics Public

   Shell 1 1