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@CompOmics

Computational Omics and Systems Biology Group

The CompOmics group, headed by Prof. Dr. Lennart Martens, specializes in the management, analysis and integration of high-throughput Omics data.

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  1. ThermoRawFileParser ThermoRawFileParser Public

    Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono

    C# 249 60

  2. DeepLC DeepLC Public

    DeepLC: Retention time prediction for peptides carrying any modification.

    Python 80 26

  3. ms2rescore ms2rescore Public

    Modular and user-friendly platform for AI-assisted rescoring of peptide identifications

    Python 66 23

  4. lesSDRF lesSDRF Public

    Spending less time on SDRF creates more time for amazing research

    Jupyter Notebook 10 8

Repositories

Showing 10 of 116 repositories
  • ms2rescore Public

    Modular and user-friendly platform for AI-assisted rescoring of peptide identifications

    CompOmics/ms2rescore's past year of commit activity
    Python 66 Apache-2.0 23 16 0 Updated Sep 21, 2026
  • MuMDIA Public

    Clean-room Rust reimplementation of MuMDIA, a data-independent-acquisition (DIA) proteomics search engine.

    CompOmics/MuMDIA's past year of commit activity
    Rust 4 Apache-2.0 0 0 6 Updated Sep 20, 2026
  • ms2rescore-rs Public

    Rust functionality for the MS²Rescore package

    CompOmics/ms2rescore-rs's past year of commit activity
    Rust 2 Apache-2.0 4 1 1 Updated Sep 20, 2026
  • mumble Public

    Finding the perfect modification for your mass shift

    CompOmics/mumble's past year of commit activity
    Python 6 Apache-2.0 1 0 0 Updated Sep 20, 2026
  • ristretto Public

    Lean and fast PSM rescoring

    CompOmics/ristretto's past year of commit activity
    Python 2 Apache-2.0 0 0 0 Updated Sep 20, 2026
  • DeepLC Public

    DeepLC: Retention time prediction for peptides carrying any modification.

    CompOmics/DeepLC's past year of commit activity
    Python 80 Apache-2.0 26 1 1 Updated Sep 18, 2026
  • MoDPAv1.0 Public

    MoDPA repository for publication

    CompOmics/MoDPAv1.0's past year of commit activity
    Jupyter Notebook 2 Apache-2.0 0 0 0 Updated Sep 18, 2026
  • compomics.com Public
    CompOmics/compomics.com's past year of commit activity
    HTML 0 0 1 1 Updated Sep 16, 2026
  • CALLC3 Public

    A command-line interface tool for training context-aware graph neural networks for chromatography.

    CompOmics/CALLC3's past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 16, 2026
  • OmicsFM_webview Public

    Interactive OmicsFM maps for proteomics and transcriptomics

    CompOmics/OmicsFM_webview's past year of commit activity
    HTML 0 0 0 0 Updated Sep 14, 2026
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