Issues

• Pipeline failure in OPERA-MS v0.9.0 (gap filling + polishing)

  CSB5/OPERA-MS#104 · Filter by author CaroleBelliardo opened on Apr 20, 2026
  1

• Installation issues

  CSB5/OPERA-MS#103 · Filter by author ShevchenkoAlla opened on Apr 17, 2026
  12

• GLIB 2.29 required during short_read_analysis

  CSB5/OPERA-MS#101 · Filter by author Mikes92 opened on Feb 24, 2026
  2

• Segmentation fault short_read_analysis

  CSB5/OPERA-MS#99 · Filter by author pguenzi-tiberi opened on Jun 23, 2025
  8

• script is Died at coverage_clustering.pl line 122, <STRAINS> line 913.

  CSB5/OPERA-MS#98 · Filter by author Khezri-abd opened on Apr 2, 2025
  12

• Massive amount of files

  CSB5/OPERA-MS#97 · Filter by author blediro opened on Mar 21, 2025
  3

• opera error bwa mapping

  CSB5/OPERA-MS#68 · Filter by author H1889 opened on Sep 21, 2021
  25

• 'values' not found

  CSB5/OPERA-MS#64 · Filter by author clb21565 opened on Jun 16, 2021
  3

• Error in the long read processing

  CSB5/OPERA-MS#55 · Filter by author EmmettPeng opened on Mar 8, 2021
  6

• Test data fails at gap-filling step, returns to prompt, leaves core file and empty consensus_cmd.sh.log file

  CSB5/OPERA-MS#54 · Filter by author RachelRodgers opened on Feb 22, 2021
  8

• Optimizing assembly of (very) large metagenomes

  CSB5/OPERA-MS#53 · Filter by author clb21565 opened on Feb 19, 2021
  1

• CIGAR and sequence length are inconsistent

  CSB5/OPERA-MS#51 · Filter by author Unaimend opened on Jan 19, 2021
  5

• Uninformative run failures at polishing step

  CSB5/OPERA-MS#50 · Filter by author mhibberd opened on Nov 17, 2020
  1

• How to download or make database?

  CSB5/OPERA-MS#49 · Filter by author YongxinLiu opened on Sep 21, 2020
  1

• Can your provide the Conda install?

  enhancement
  CSB5/OPERA-MS#48 · Filter by author YongxinLiu opened on Sep 21, 2020
  13

• How to skip Polishing step?

  CSB5/OPERA-MS#46 · Filter by author chihminchang opened on Jul 26, 2020
  3

• gap_filling.err - Remap.py

  CSB5/OPERA-MS#40 · Filter by author krithikaarumugam opened on May 4, 2020
  1

• test-run stops after reference based clustering (5/8)

  CSB5/OPERA-MS#39 · Filter by author tpriest0 opened on Apr 10, 2020
  10

• gap filling error

  CSB5/OPERA-MS#30 · Filter by author Shirley-Q opened on Aug 31, 2019
  18

• error in pairedEdges

  CSB5/OPERA-MS#27 · Filter by author shijiewangyou opened on Aug 14, 2019
  2

• Error in during reference based clustering

  CSB5/OPERA-MS#25 · Filter by author Shirley-Q opened on Aug 9, 2019
  5

• nucmer error in running test data

  CSB5/OPERA-MS#19 · Filter by author BaiweiLo opened on Apr 30, 2019
  6

• Error running test script

  CSB5/OPERA-MS#16 · Filter by author ilyavs opened on Feb 24, 2019
  12