Issues

• Memory

  Bioconductor/GenomicRanges#96 · Filter by author Zepeng-Mu opened on Jan 18, 2026

• Strange setdiff behavior - identified bug

  Bioconductor/GenomicRanges#95 · Filter by author gevro opened on Dec 29, 2025
  2

• strand is ignored and stranded (seqnames, start, end, strand) tuples are treated as invalid

  Bioconductor/GenomicRanges#94 · Filter by author ttriche opened on Dec 11, 2025
  2

• setdiff GRangesList,GRangesList

  Bioconductor/GenomicRanges#91 · Filter by author gevro opened on Jul 13, 2025

• resize out of bounds warning message

  Bioconductor/GenomicRanges#90 · Filter by author gevro opened on Jul 9, 2025

• resize documentation

  Bioconductor/GenomicRanges#89 · Filter by author gevro opened on Jul 8, 2025

• Bug in unique

  Bioconductor/GenomicRanges#88 · Filter by author gevro opened on Jun 24, 2025

• Ignoring negative positions when intersecting two GRanges objects

  Bioconductor/GenomicRanges#87 · Filter by author csoneson opened on Jan 17, 2025

• subtract documentation

  Bioconductor/GenomicRanges#83 · Filter by author gevro opened on Dec 28, 2023
  7

• RleList subsetting has integer overflow on mammal genomes

  Bioconductor/GenomicRanges#79 · Filter by author alexfriman opened on Jul 12, 2023

• Could GenomicRanges::binnedAverage() be reused for other purposes?

  Bioconductor/GenomicRanges#77 · Filter by author ssayols opened on Mar 23, 2023
  4

• Error in getListElement(x, i, ...) : GRanges objects don't support [[, as.list(), lapply(), or unlist() at the moment

  Bioconductor/GenomicRanges#76 · Filter by author AntoniaChroni opened on Feb 28, 2023
  17

• nearestKNeighbors does not handle seqlevel pruning

  Bioconductor/GenomicRanges#74 · Filter by author yeyuan98 opened on Jan 9, 2023
  2

• setdiff not behaving as expected

  Bioconductor/GenomicRanges#67 · Filter by author gevro opened on Jul 15, 2022

• Representing missing ranges

  Bioconductor/GenomicRanges#66 · Filter by author LiNk-NY opened on May 20, 2022

• Could we directly save the metadata when we use the function makeTxDbFromGFF?

  Bioconductor/GenomicRanges#57 · Filter by author Codezy99 opened on Apr 13, 2021

• Document and export get_out_of_bound_index

  Bioconductor/GenomicRanges#53 · Filter by author rpolicastro opened on Jan 19, 2021
  2

• overlaps with character arguments as seqlevels?

  Bioconductor/GenomicRanges#52 · Filter by author LTLA opened on Jan 19, 2021
  2

• GRanges gives 'Error in getListElement' when creating objects

  Bioconductor/GenomicRanges#51 · Filter by author zhezhenwang opened on Jan 5, 2021

• GPos doesn't survive round-trip conversion to data.frame

  Bioconductor/GenomicRanges#46 · Filter by author PeteHaitch opened on Aug 24, 2020
  2

• pc Performance Slow for Two GRangesList

  Bioconductor/GenomicRanges#44 · Filter by author DarioS opened on Jul 31, 2020
  4

• Enhancement: Promoters Calculated Don't Overlap with Other Genes

  enhancement
  Bioconductor/GenomicRanges#43 · Filter by author DarioS opened on Jul 29, 2020
  3

• strange code for GenomicRanges:::compatibleStrand

  Bioconductor/GenomicRanges#33 · Filter by author msannell opened on Feb 9, 2020
  1

  

• inner and outer mcols for GRangesFactor

  Bioconductor/GenomicRanges#30 · Filter by author LTLA opened on Jun 23, 2019
  1

• GRangesFactor should inherit from GenomicRanges

  Bioconductor/GenomicRanges#26 · Filter by author hpages opened on Jun 16, 2019