From 8e08be03adb4d3e9ebb74a26c0507fc64541e837 Mon Sep 17 00:00:00 2001
From: Niroj33 <86530493+professor3333@users.noreply.github.com>
Date: Fri, 6 Nov 2026 09:41:18 +0545
Subject: [PATCH] Record neural run 2: DeBERTa matches CRF agreement, invents
 more prerequisites

24 runs on a T4. The best DeBERTa-v3-small run reaches typed F1 0.133
against the model-drafted dev records (CRF 0.145; paired difference
-0.013 [-0.063, +0.043]) but a clearly worse false-prerequisite rate
(0.607 vs 0.353). DistilBERT is clearly worse (0.075). Uniform span
weights were stopped at epoch 4 before predicting anything. Transformer
numbers are optimistic: runs were selected on the same records.
---
 README.md                                     |  12 +-
 docs/model_card.md                            |   4 +-
 reports/neural/run-2/README.md                | 112 +++++
 ..._weightingsqrt-learning_rate5e-05-seed0.md |  25 +
 ..._weightingsqrt-learning_rate5e-05-seed2.md |  25 +
 ..._weightingsqrt-learning_rate5e-05-seed0.md |  25 +
 ..._weightingsqrt-learning_rate5e-05-seed2.md |  25 +
 ...-learning_rate2e-05-seed0_dev_agreement.md |  57 +++
 ...one-learning_rate2e-05-seed0_dev_manual.md |  57 +++
 ...-learning_rate2e-05-seed1_dev_agreement.md |  57 +++
 ...one-learning_rate2e-05-seed1_dev_manual.md |  57 +++
 ...-learning_rate2e-05-seed2_dev_agreement.md |  57 +++
 ...one-learning_rate2e-05-seed2_dev_manual.md |  57 +++
 ...-learning_rate5e-05-seed0_dev_agreement.md |  42 ++
 ...one-learning_rate5e-05-seed0_dev_manual.md |  42 ++
 ...-learning_rate5e-05-seed1_dev_agreement.md |  42 ++
 ...one-learning_rate5e-05-seed1_dev_manual.md |  42 ++
 ...-learning_rate5e-05-seed2_dev_agreement.md |  42 ++
 ...one-learning_rate5e-05-seed2_dev_manual.md |  42 ++
 ...-learning_rate2e-05-seed0_dev_agreement.md |  57 +++
 ...qrt-learning_rate2e-05-seed0_dev_manual.md |  57 +++
 ...-learning_rate2e-05-seed1_dev_agreement.md |  57 +++
 ...qrt-learning_rate2e-05-seed1_dev_manual.md |  57 +++
 ...-learning_rate2e-05-seed2_dev_agreement.md |  57 +++
 ...qrt-learning_rate2e-05-seed2_dev_manual.md |  57 +++
 ...-learning_rate5e-05-seed0_dev_agreement.md |  57 +++
 ...qrt-learning_rate5e-05-seed0_dev_manual.md |  57 +++
 ...-learning_rate5e-05-seed1_dev_agreement.md |  57 +++
 ...qrt-learning_rate5e-05-seed1_dev_manual.md |  57 +++
 ...-learning_rate5e-05-seed2_dev_agreement.md |  57 +++
 ...qrt-learning_rate5e-05-seed2_dev_manual.md |  57 +++
 ...-learning_rate2e-05-seed0_dev_agreement.md |  57 +++
 ...one-learning_rate2e-05-seed0_dev_manual.md |  42 ++
 ...-learning_rate2e-05-seed1_dev_agreement.md |  42 ++
 ...one-learning_rate2e-05-seed1_dev_manual.md |  42 ++
 ...-learning_rate2e-05-seed2_dev_agreement.md |  57 +++
 ...one-learning_rate2e-05-seed2_dev_manual.md |  42 ++
 ...-learning_rate5e-05-seed0_dev_agreement.md |  42 ++
 ...one-learning_rate5e-05-seed0_dev_manual.md |  42 ++
 ...-learning_rate5e-05-seed1_dev_agreement.md |  57 +++
 ...one-learning_rate5e-05-seed1_dev_manual.md |  57 +++
 ...-learning_rate5e-05-seed2_dev_agreement.md |  42 ++
 ...one-learning_rate5e-05-seed2_dev_manual.md |  42 ++
 ...-learning_rate2e-05-seed0_dev_agreement.md |  57 +++
 ...qrt-learning_rate2e-05-seed0_dev_manual.md |  57 +++
 ...-learning_rate2e-05-seed1_dev_agreement.md |  57 +++
 ...qrt-learning_rate2e-05-seed1_dev_manual.md |  57 +++
 ...-learning_rate2e-05-seed2_dev_agreement.md |  57 +++
 ...qrt-learning_rate2e-05-seed2_dev_manual.md |  57 +++
 ...-learning_rate5e-05-seed0_dev_agreement.md |  57 +++
 ...qrt-learning_rate5e-05-seed0_dev_manual.md |  57 +++
 ...-learning_rate5e-05-seed1_dev_agreement.md |  57 +++
 ...qrt-learning_rate5e-05-seed1_dev_manual.md |  57 +++
 ...-learning_rate5e-05-seed2_dev_agreement.md |  57 +++
 ...qrt-learning_rate5e-05-seed2_dev_manual.md |  57 +++
 reports/neural/run-2/experiment_deberta.md    |  32 ++
 reports/neural/run-2/experiment_distilbert.md |  32 ++
 ...one-learning_rate2e-05-seed0.metadata.json | 176 +++++++
 ...one-learning_rate2e-05-seed1.metadata.json | 176 +++++++
 ...one-learning_rate2e-05-seed2.metadata.json | 176 +++++++
 ...one-learning_rate5e-05-seed0.metadata.json | 176 +++++++
 ...one-learning_rate5e-05-seed1.metadata.json | 176 +++++++
 ...one-learning_rate5e-05-seed2.metadata.json | 176 +++++++
 ...qrt-learning_rate2e-05-seed0.metadata.json | 440 ++++++++++++++++++
 ...qrt-learning_rate2e-05-seed1.metadata.json | 440 ++++++++++++++++++
 ...qrt-learning_rate2e-05-seed2.metadata.json | 416 +++++++++++++++++
 ...qrt-learning_rate5e-05-seed0.metadata.json | 368 +++++++++++++++
 ...qrt-learning_rate5e-05-seed1.metadata.json | 440 ++++++++++++++++++
 ...qrt-learning_rate5e-05-seed2.metadata.json | 368 +++++++++++++++
 ...one-learning_rate2e-05-seed0.metadata.json | 176 +++++++
 ...one-learning_rate2e-05-seed1.metadata.json | 176 +++++++
 ...one-learning_rate2e-05-seed2.metadata.json | 176 +++++++
 ...one-learning_rate5e-05-seed0.metadata.json | 176 +++++++
 ...one-learning_rate5e-05-seed1.metadata.json | 440 ++++++++++++++++++
 ...one-learning_rate5e-05-seed2.metadata.json | 176 +++++++
 ...qrt-learning_rate2e-05-seed0.metadata.json | 344 ++++++++++++++
 ...qrt-learning_rate2e-05-seed1.metadata.json | 440 ++++++++++++++++++
 ...qrt-learning_rate2e-05-seed2.metadata.json | 440 ++++++++++++++++++
 ...qrt-learning_rate5e-05-seed0.metadata.json | 440 ++++++++++++++++++
 ...qrt-learning_rate5e-05-seed1.metadata.json | 248 ++++++++++
 ...qrt-learning_rate5e-05-seed2.metadata.json | 440 ++++++++++++++++++
 ...ightingsqrt-learning_rate5e-05-seed0.jsonl | 272 +++++++++++
 ...ightingsqrt-learning_rate5e-05-seed2.jsonl | 272 +++++++++++
 83 files changed, 10559 insertions(+), 3 deletions(-)
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diff --git a/README.md b/README.md
index c146ec6..01ff3a9 100644
--- a/README.md
+++ b/README.md
@@ -156,7 +156,7 @@ item can be highlighted in the original advisory.
 | 1 · Feasibility | Pinned ingestion, corpus statistics, label schema, offset-preserving preprocessing, pilot sample, annotation tooling | ✅ built |
 | 1 · Pilot | 100-document pilot (`pilot-2`: 22 hand-labelled, 78 from model drafts), [decision gate](docs/pilot_gate.md), guidelines v0.2 frozen, [acceptance targets](docs/targets.md) declared | ✅ done |
 | 2 · Baselines | Rules baseline, CRF + logistic-regression attributes and groups, evaluator with bootstrap CIs, evidence viewer | ✅ built · preliminary pilot dev scores |
-| 3 · Neural models | Frozen leakage-safe splits, annotation batches (01–03, 06: model-drafted), DistilBERT and DeBERTa-v3 with span / role / group heads, experiment runner | 🟨 code ready · not yet trained |
+| 3 · Neural models | Frozen leakage-safe splits, annotation batches (01–03, 06: model-drafted), DistilBERT and DeBERTa-v3 with span / role / group heads, experiment runner | 🟨 trained on model drafts (run 2) · CRF still stronger on invented prerequisites |
 | 4 · Reliability | Calibration and review policy, formatting robustness (rules: 100%), challenge-set and error-catalogue tooling | 🟨 tooling ready · thresholds await labels |
 | 5 · Application | FastAPI API, review UI, SQLite (WAL) with append-only history, exports, Docker Compose stack, release manifests, tested rollback, CI image smoke test | ✅ built |
 | 6 · Production | Benchmark harness, ONNX/INT8 export (FP32 parity exact), local proxy benchmarks and load tests, monitoring; target-host numbers and hosted release pending | 🟨 harness and proxy results |
@@ -185,6 +185,8 @@ cannot be judged as declared.
 | Rules (`rules-2`) | 0.107 [0.058, 0.154] | 0.142 [0.085, 0.195] | 0.330 [0.165, 0.467] |
 | CRF (`crf-pilot-2-batch-01`) | 0.128 [0.095, 0.168] | 0.174 [0.134, 0.215] | 0.416 [0.294, 0.493] |
 | CRF (`crf-batches-01-02`, + 100 model-drafted `batch-02` records) | 0.145 [0.105, 0.185] | 0.221 [0.171, 0.268] | 0.353 [0.260, 0.416] |
+| DistilBERT (`distilbert-2`, best of 12 runs, same training data) | 0.075 [0.051, 0.105] | 0.101 [0.077, 0.131] | 0.541 [0.478, 0.601] |
+| DeBERTa-v3-small (`deberta-2`, best of 12 runs, same training data) | 0.133 [0.108, 0.164] | 0.165 [0.142, 0.194] | 0.607 [0.565, 0.640] |
 
 Adding `batch-02` clearly improves exact-span agreement (+0.047, 95% CI [+0.004, +0.086]), but not
 typed agreement. On the 10 hand-labelled documents, `crf-batches-01-02` scores 0.370 typed F1
@@ -192,6 +194,14 @@ typed agreement. On the 10 hand-labelled documents, `crf-batches-01-02` scores 0
 [`reports/agreement/`](reports/agreement/README.md). Its disagreements with the drafts, by
 error type, are in [`docs/error_catalogue.md`](docs/error_catalogue.md).
 
+The transformers were fine-tuned on one T4 GPU, with runs chosen on these model-drafted dev
+records only. DeBERTa is not clearly different from the CRF on typed agreement (−0.013, 95% CI
+[−0.063, +0.043]). It is clearly worse on the false-prerequisite rate (+0.254 [+0.188, +0.343])
+because it predicts about 8 conditions per document against 1.8. DistilBERT is clearly worse
+on typed agreement (−0.070 [−0.113, −0.020]). The transformer rows are optimistic: their
+epochs and runs were selected on these same records, and the CRF's were not. See [`reports/neural/run-2/`](reports/neural/run-2/README.md);
+the first run's failed configuration is recorded in [`reports/neural/run-1/`](reports/neural/run-1/README.md).
+
 95% project-group bootstrap intervals (1,000 resamples). Full reports, including scores against
 the 28 model-made dev records (which measure agreement with the drafting model, not accuracy),
 are in [`reports/pilot/`](reports/pilot/README.md). The paired difference from adding `batch-01` (+0.214 typed F1,
diff --git a/docs/model_card.md b/docs/model_card.md
index b983027..968497b 100644
--- a/docs/model_card.md
+++ b/docs/model_card.md
@@ -28,8 +28,8 @@ reviewer confirms or corrects every item before export.
 |---|---|---|
 | `rules-2` | Deterministic cue rules over the shared preprocessing (no learning) | Runs; 100% formatting-consistent on 300 documents |
 | CRF | `python-crfsuite` BIO span tagger with logistic-regression category, role and group classifiers. Features `crf-features-1`, optional spaCy part-of-speech tags | Trained on pilot data only |
-| DistilBERT | `distilbert/distilbert-base-cased` (Apache-2.0), revision `6ea81172465e8b0ad3fddeed32b986cdcdcffcf0` | Run 1 failed (span over-prediction, [`reports/neural/run-1/`](../reports/neural/run-1/README.md)); run 2 pending |
-| DeBERTa-v3-small | `microsoft/deberta-v3-small` (MIT), revision `a36c739020e01763fe789b4b85e2df55d6180012` | Run 1 failed (span over-prediction, [`reports/neural/run-1/`](../reports/neural/run-1/README.md)); run 2 pending |
+| DistilBERT | `distilbert/distilbert-base-cased` (Apache-2.0), revision `6ea81172465e8b0ad3fddeed32b986cdcdcffcf0` | Run 2: best agreement typed F1 0.075 (CRF 0.145), [`reports/neural/run-2/`](../reports/neural/run-2/README.md) |
+| DeBERTa-v3-small | `microsoft/deberta-v3-small` (MIT), revision `a36c739020e01763fe789b4b85e2df55d6180012` | Run 2: best agreement typed F1 0.133, false-prerequisite rate 0.607 (CRF 0.353), [`reports/neural/run-2/`](../reports/neural/run-2/README.md) |
 
 The transformer models share one design:
 - the encoder is fine-tuned, never pretrained;
diff --git a/reports/neural/run-2/README.md b/reports/neural/run-2/README.md
new file mode 100644
index 0000000..be9d9fd
--- /dev/null
+++ b/reports/neural/run-2/README.md
@@ -0,0 +1,112 @@
+# Neural run 2 (2026-11-06)
+
+The second GPU run of `scripts/gpu/run_neural.sh`, a Kaggle background version on one Tesla T4.
+It covers the `distilbert-2` and `deberta-2` grids:
+- two span-tag weightings (`sqrt`, `none`) × two learning rates (2e-5, 5e-5) × three seeds, 24
+  runs;
+- up to 15 epochs, with patience 3.
+
+The other settings match run 1 ([`../run-1/`](../run-1/README.md)):
+- **Training:** the train split of `pilot-2`, `batch-01` and `batch-02` (239 documents: 7
+  `manual`, 232 model drafts).
+- **Early stopping and run selection:** only the model-drafted dev batches `batch-03` and
+  `batch-06`.
+- **Untouched:** the 10 hand-labelled dev documents had no part in selection, and the test
+  split was not touched.
+
+All scores against model drafts measure **agreement with the drafting model, not accuracy**.
+
+## All runs (agreement with 172 model-drafted dev records, at the selected epoch)
+
+| Run | Best / last epoch | Typed F1 | Span precision | Span recall | False-prerequisite rate | Conditions per document | Seconds |
+|---|---:|---:|---:|---:|---:|---:|---:|
+| `deberta-2-base-bio_weightingnone-learning_rate2e-05-seed0` | 1/4 | 0.000 | 0.000 | 0.000 | 0.955 | 0.9 | 69 |
+| `deberta-2-base-bio_weightingnone-learning_rate2e-05-seed1` | 1/4 | 0.000 | 0.000 | 0.000 | 0.937 | 8.6 | 69 |
+| `deberta-2-base-bio_weightingnone-learning_rate2e-05-seed2` | 1/4 | 0.000 | 0.000 | 0.000 | 0.959 | 4.7 | 68 |
+| `deberta-2-base-bio_weightingnone-learning_rate5e-05-seed0` | 1/4 | 0.000 | 0.000 | 0.000 | 0.000 | 0.0 | 68 |
+| `deberta-2-base-bio_weightingnone-learning_rate5e-05-seed1` | 1/4 | 0.000 | 0.000 | 0.000 | 0.000 | 0.0 | 68 |
+| `deberta-2-base-bio_weightingnone-learning_rate5e-05-seed2` | 1/4 | 0.000 | 0.000 | 0.000 | 0.000 | 0.0 | 68 |
+| `deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed0` | 15/15 | 0.072 | 0.055 | 0.238 | 0.660 | 11.5 | 267 |
+| `deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed1` | 15/15 | 0.077 | 0.062 | 0.244 | 0.658 | 10.9 | 265 |
+| `deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed2` | 11/14 | 0.070 | 0.054 | 0.269 | 0.701 | 13.4 | 246 |
+| `deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0` | 9/12 | **0.133** | 0.108 | 0.355 | 0.607 | 8.8 | 210 |
+| `deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed1` | 15/15 | 0.132 | 0.108 | 0.319 | 0.596 | 7.7 | 263 |
+| `deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed2` | 9/12 | 0.130 | 0.100 | 0.319 | 0.577 | 8.4 | 210 |
+| `distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed0` | 1/4 | 0.000 | 0.000 | 0.000 | 0.000 | 0.0 | 39 |
+| `distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed1` | 1/4 | 0.000 | 0.000 | 0.000 | 0.000 | 0.0 | 39 |
+| `distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed2` | 1/4 | 0.000 | 0.000 | 0.000 | 0.000 | 0.0 | 39 |
+| `distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed0` | 1/4 | 0.000 | 0.000 | 0.000 | 0.000 | 0.0 | 39 |
+| `distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed1` | 14/15 | 0.064 | 0.073 | 0.104 | 0.510 | 4.1 | 146 |
+| `distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed2` | 1/4 | 0.000 | 0.000 | 0.000 | 0.000 | 0.0 | 39 |
+| `distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed0` | 8/11 | 0.039 | 0.034 | 0.168 | 0.724 | 13.2 | 101 |
+| `distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed1` | 12/15 | 0.042 | 0.037 | 0.137 | 0.662 | 10.3 | 147 |
+| `distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed2` | 14/15 | 0.033 | 0.027 | 0.111 | 0.667 | 11.1 | 147 |
+| `distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed0` | 13/15 | 0.074 | 0.069 | 0.184 | 0.554 | 7.3 | 147 |
+| `distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed1` | 4/7 | 0.041 | 0.030 | 0.194 | 0.770 | 17.7 | 69 |
+| `distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed2` | 15/15 | **0.075** | 0.072 | 0.171 | 0.541 | 6.9 | 148 |
+
+Typed F1 across seeds (mean ± SD):
+
+| Grid cell | 2e-5 | 5e-5 |
+|---|---:|---:|
+| DeBERTa, `sqrt` | 0.073 ± 0.004 | **0.131 ± 0.001** |
+| DeBERTa, `none` | 0.000 ± 0.000 | 0.000 ± 0.000 |
+| DistilBERT, `sqrt` | 0.038 ± 0.004 | 0.063 ± 0.019 |
+| DistilBERT, `none` | 0.000 ± 0.000 | 0.021 ± 0.037 |
+
+For reference, `crf-batches-01-02` scores 0.145 typed F1 on the same records
+([`../../agreement/`](../../agreement/README.md)).
+
+## Best run of each grid against the CRF
+
+Paired project-group bootstrap, 1,000 resamples, B − A with A = `crf-batches-01-02`.
+
+| B | Slice | Typed F1 | Exact span precision | False-prerequisite rate (lower is better) |
+|---|---|---:|---:|---:|
+| `deberta-2-…sqrt…5e-05-seed0` | agreement (172) | −0.013 [−0.063, +0.043] | **−0.224 [−0.288, −0.163]** | **+0.254 [+0.188, +0.343]** |
+| `distilbert-2-…sqrt…5e-05-seed2` | agreement (172) | **−0.070 [−0.113, −0.020]** | **−0.260 [−0.320, −0.202]** | **+0.187 [+0.124, +0.252]** |
+| `deberta-2-…sqrt…5e-05-seed0` | hand-labelled (10) | −0.106 [−0.313, +0.194] | −0.304 [−0.525, +0.150] | +0.350 [−0.233, +0.690] |
+| `distilbert-2-…sqrt…5e-05-seed2` | hand-labelled (10) | −0.178 [−0.316, +0.040] | −0.357 [−0.583, +0.026] | +0.258 [−0.194, +0.500] |
+
+Bold marks a clear difference. Full reports: `compare_*.md`, and `<run>_dev_agreement.md` /
+`<run>_dev_manual.md` for every run.
+
+## Reading
+
+The transformer numbers are **optimistic**: early stopping and the choice of the best run used
+these same 172 records, while the CRF was not tuned on them. A difference in the CRF's favour
+is therefore conservative. A difference in a transformer's favour would need a separate
+held-out slice.
+
+- **The softer weighting fixed most of run 1's failure.** The best DeBERTa typed F1 rose from
+  0.023 to 0.133, and all three DeBERTa `sqrt` 5e-5 seeds agree within 0.003.
+- **DeBERTa is not clearly different from the CRF on typed agreement** (−0.013, interval
+  across zero). It is clearly worse on precision and on the false-prerequisite rate: it still
+  predicts about 8 conditions per document against 1.8 for the CRF, so it invents
+  prerequisites more often. On the error that matters most, the CRF remains the better
+  system.
+- **DistilBERT is clearly worse than the CRF** on typed agreement (−0.070).
+- **Uniform weights (`none`) were cut off by early stopping, not tested.** These runs predict
+  no spans after epoch 1, score 0.000, and patience 3 stops them at epoch 4 before they can
+  start tagging. The one that survived (DistilBERT, 5e-5, seed 1) climbed to 0.064 by epoch
+  14. Run 3 needs a minimum number of epochs before patience applies.
+- **Several runs were still improving at their last epoch** (best epoch 15 of 15).
+- **On the 10 hand-labelled documents nothing is clear**, as with every other comparison on
+  that slice.
+
+## Provenance
+
+- Results archive SHA-256 `7b760c8b52e7f5f69cd50a4f76ee9fee8b9ed540c78bc15a06f238941ba8aa85`.
+- Bundles archive (best run of each grid, weights not committed): 661,598,084 bytes.
+- Committed:
+  - per-run `metadata.json` in `metadata/` (configuration, base revision, training hash and
+    origins, span-tag weights, per-epoch losses and dev scores, peak GPU memory);
+  - the predictions of the two best runs in `predictions/`.
+
+To reproduce the comparisons from the committed predictions:
+
+```bash
+uv run triggermap compare annotations/batches/batch-03.jsonl reports/agreement/predictions/crf-batches-01-02.jsonl \
+    reports/neural/run-2/predictions/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0.jsonl \
+    --add-gold annotations/batches/batch-06.jsonl --split dev
+```
diff --git a/reports/neural/run-2/compare_agreement_deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0.md b/reports/neural/run-2/compare_agreement_deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0.md
new file mode 100644
index 0000000..a5ab668
--- /dev/null
+++ b/reports/neural/run-2/compare_agreement_deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0.md
@@ -0,0 +1,25 @@
+# Agreement: crf-batches-01-02 -> deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0
+
+- Gold: `annotations/batches/batch-03.jsonl`, `annotations/batches/batch-06.jsonl` (dev split of `splits/pool-v1.json`; origin: all; 172 documents)
+- Baseline (A): `reports/agreement/predictions/crf-batches-01-02.jsonl` (crf-batches-01-02)
+- Candidate (B): `reports/neural/predictions/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0.jsonl` (deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0)
+- Bootstrap: 1000 paired resamples, project clusters, seed 0
+- Documents: 172
+
+Differences are B minus A with 95% paired bootstrap intervals. *Clear* means the whole interval lies on one side of zero.
+
+| Metric | A (crf-batches-01-02) | B (deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0) | B - A | 95% CI | Verdict |
+|---|---:|---:|---:|:---:|---|
+| Typed condition micro-F1 (span + category + role) | 0.145 | 0.133 | -0.013 | [-0.063, +0.043] | no clear difference |
+| Exact span F1 | 0.221 | 0.165 | -0.056 | [-0.111, +0.007] | no clear difference |
+| Exact span precision | 0.332 | 0.108 | -0.224 | [-0.288, -0.163] | B clearly worse |
+| Exact span recall | 0.166 | 0.355 | +0.189 | [+0.127, +0.254] | B clearly better |
+| Role macro-F1 (roles with gold support) | 0.115 | 0.087 | -0.028 | [-0.078, +0.024] | no clear difference |
+| Category macro-F1 | 0.137 | 0.129 | -0.008 | [-0.060, +0.054] | no clear difference |
+| Group exact-match F1 | 0.000 | 0.000 | +0.000 | [+0.000, +0.000] | no clear difference |
+| Complete-document exact match, documents with conditions | 0.065 | 0.026 | -0.039 | [-0.076, +0.000] | no clear difference |
+| Complete-document exact match, documents without conditions | 0.882 | 0.176 | -0.706 | [-0.917, -0.462] | B clearly worse |
+| False prerequisite rate (lower is better) | 0.353 | 0.607 | +0.254 | [+0.188, +0.343] | B clearly worse |
+| Reversed meaning rate (lower is better) | 0.074 | 0.053 | -0.021 | [-0.089, +0.039] | no clear difference |
+| Category accuracy on exactly matched spans | 0.797 | 0.898 | +0.101 | [+0.010, +0.227] | B clearly better |
+| Role accuracy on exactly matched spans | 0.859 | 0.905 | +0.046 | [-0.043, +0.111] | no clear difference |
diff --git a/reports/neural/run-2/compare_agreement_distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed2.md b/reports/neural/run-2/compare_agreement_distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed2.md
new file mode 100644
index 0000000..e048251
--- /dev/null
+++ b/reports/neural/run-2/compare_agreement_distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed2.md
@@ -0,0 +1,25 @@
+# Agreement: crf-batches-01-02 -> distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed2
+
+- Gold: `annotations/batches/batch-03.jsonl`, `annotations/batches/batch-06.jsonl` (dev split of `splits/pool-v1.json`; origin: all; 172 documents)
+- Baseline (A): `reports/agreement/predictions/crf-batches-01-02.jsonl` (crf-batches-01-02)
+- Candidate (B): `reports/neural/predictions/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed2.jsonl` (distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed2)
+- Bootstrap: 1000 paired resamples, project clusters, seed 0
+- Documents: 172
+
+Differences are B minus A with 95% paired bootstrap intervals. *Clear* means the whole interval lies on one side of zero.
+
+| Metric | A (crf-batches-01-02) | B (distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed2) | B - A | 95% CI | Verdict |
+|---|---:|---:|---:|:---:|---|
+| Typed condition micro-F1 (span + category + role) | 0.145 | 0.075 | -0.070 | [-0.113, -0.020] | B clearly worse |
+| Exact span F1 | 0.221 | 0.101 | -0.120 | [-0.172, -0.062] | B clearly worse |
+| Exact span precision | 0.332 | 0.072 | -0.260 | [-0.320, -0.202] | B clearly worse |
+| Exact span recall | 0.166 | 0.171 | +0.005 | [-0.054, +0.061] | no clear difference |
+| Role macro-F1 (roles with gold support) | 0.115 | 0.060 | -0.055 | [-0.093, -0.009] | B clearly worse |
+| Category macro-F1 | 0.137 | 0.066 | -0.071 | [-0.108, -0.023] | B clearly worse |
+| Group exact-match F1 | 0.000 | 0.000 | +0.000 | [+0.000, +0.000] | no clear difference |
+| Complete-document exact match, documents with conditions | 0.065 | 0.013 | -0.052 | [-0.095, -0.007] | B clearly worse |
+| Complete-document exact match, documents without conditions | 0.882 | 0.882 | +0.000 | [-0.263, +0.214] | no clear difference |
+| False prerequisite rate (lower is better) | 0.353 | 0.541 | +0.187 | [+0.124, +0.252] | B clearly worse |
+| Reversed meaning rate (lower is better) | 0.074 | 0.046 | -0.029 | [-0.083, +0.013] | no clear difference |
+| Category accuracy on exactly matched spans | 0.797 | 0.848 | +0.052 | [-0.058, +0.192] | no clear difference |
+| Role accuracy on exactly matched spans | 0.859 | 0.879 | +0.019 | [-0.082, +0.108] | no clear difference |
diff --git a/reports/neural/run-2/compare_manual_deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0.md b/reports/neural/run-2/compare_manual_deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0.md
new file mode 100644
index 0000000..959f11a
--- /dev/null
+++ b/reports/neural/run-2/compare_manual_deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0.md
@@ -0,0 +1,25 @@
+# Hand-labelled dev: crf-batches-01-02 -> deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0
+
+- Gold: `annotations/pilot/pilot-2.jsonl` (dev split of `splits/pool-v1.json`; origin: manual; 10 documents)
+- Baseline (A): `reports/agreement/predictions/crf-batches-01-02.jsonl` (crf-batches-01-02)
+- Candidate (B): `reports/neural/predictions/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0.jsonl` (deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0)
+- Bootstrap: 1000 paired resamples, project clusters, seed 0
+- Documents: 10
+
+Differences are B minus A with 95% paired bootstrap intervals. *Clear* means the whole interval lies on one side of zero.
+
+| Metric | A (crf-batches-01-02) | B (deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0) | B - A | 95% CI | Verdict |
+|---|---:|---:|---:|:---:|---|
+| Typed condition micro-F1 (span + category + role) | 0.370 | 0.265 | -0.106 | [-0.313, +0.194] | no clear difference |
+| Exact span F1 | 0.370 | 0.294 | -0.076 | [-0.294, +0.239] | no clear difference |
+| Exact span precision | 0.500 | 0.196 | -0.304 | [-0.525, +0.150] | no clear difference |
+| Exact span recall | 0.294 | 0.588 | +0.294 | [+0.111, +0.545] | B clearly better |
+| Role macro-F1 (roles with gold support) | 0.200 | 0.158 | -0.042 | [-0.262, +0.143] | no clear difference |
+| Category macro-F1 | 0.237 | 0.285 | +0.048 | [-0.202, +0.324] | no clear difference |
+| Group exact-match F1 | 0.500 | 0.000 | -0.500 | [-1.000, +0.000] | no clear difference |
+| Complete-document exact match, documents with conditions | 0.222 | 0.000 | -0.222 | [-0.455, +0.000] | no clear difference |
+| Complete-document exact match, documents without conditions | 1.000 | 1.000 | +0.000 | [+0.000, +0.000] | no clear difference |
+| False prerequisite rate (lower is better) | 0.333 | 0.683 | +0.350 | [-0.233, +0.690] | no clear difference |
+| Reversed meaning rate (lower is better) | 0.000 | 0.000 | +0.000 | [+0.000, +0.000] | no clear difference |
+| Category accuracy on exactly matched spans | 1.000 | 1.000 | +0.000 | [+0.000, +1.000] | no clear difference |
+| Role accuracy on exactly matched spans | 1.000 | 0.900 | -0.100 | [-0.333, +0.778] | no clear difference |
diff --git a/reports/neural/run-2/compare_manual_distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed2.md b/reports/neural/run-2/compare_manual_distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed2.md
new file mode 100644
index 0000000..06c5586
--- /dev/null
+++ b/reports/neural/run-2/compare_manual_distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed2.md
@@ -0,0 +1,25 @@
+# Hand-labelled dev: crf-batches-01-02 -> distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed2
+
+- Gold: `annotations/pilot/pilot-2.jsonl` (dev split of `splits/pool-v1.json`; origin: manual; 10 documents)
+- Baseline (A): `reports/agreement/predictions/crf-batches-01-02.jsonl` (crf-batches-01-02)
+- Candidate (B): `reports/neural/predictions/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed2.jsonl` (distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed2)
+- Bootstrap: 1000 paired resamples, project clusters, seed 0
+- Documents: 10
+
+Differences are B minus A with 95% paired bootstrap intervals. *Clear* means the whole interval lies on one side of zero.
+
+| Metric | A (crf-batches-01-02) | B (distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed2) | B - A | 95% CI | Verdict |
+|---|---:|---:|---:|:---:|---|
+| Typed condition micro-F1 (span + category + role) | 0.370 | 0.192 | -0.178 | [-0.316, +0.040] | no clear difference |
+| Exact span F1 | 0.370 | 0.192 | -0.178 | [-0.316, +0.040] | no clear difference |
+| Exact span precision | 0.500 | 0.143 | -0.357 | [-0.583, +0.026] | no clear difference |
+| Exact span recall | 0.294 | 0.294 | +0.000 | [-0.143, +0.182] | no clear difference |
+| Role macro-F1 (roles with gold support) | 0.200 | 0.132 | -0.068 | [-0.257, +0.038] | no clear difference |
+| Category macro-F1 | 0.237 | 0.154 | -0.083 | [-0.211, +0.071] | no clear difference |
+| Group exact-match F1 | 0.500 | 0.000 | -0.500 | [-1.000, +0.000] | no clear difference |
+| Complete-document exact match, documents with conditions | 0.222 | 0.111 | -0.111 | [-0.375, +0.000] | no clear difference |
+| Complete-document exact match, documents without conditions | 1.000 | 0.000 | -1.000 | [-1.000, +0.000] | no clear difference |
+| False prerequisite rate (lower is better) | 0.333 | 0.591 | +0.258 | [-0.194, +0.500] | no clear difference |
+| Reversed meaning rate (lower is better) | 0.000 | 0.231 | +0.231 | [+0.000, +0.600] | no clear difference |
+| Category accuracy on exactly matched spans | 1.000 | 1.000 | +0.000 | [+0.000, +1.000] | no clear difference |
+| Role accuracy on exactly matched spans | 1.000 | 1.000 | +0.000 | [+0.000, +1.000] | no clear difference |
diff --git a/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate2e-05-seed0_dev_agreement.md b/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate2e-05-seed0_dev_agreement.md
new file mode 100644
index 0000000..52c63fa
--- /dev/null
+++ b/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate2e-05-seed0_dev_agreement.md
@@ -0,0 +1,57 @@
+# Agreement with model drafts: deberta-2-base-bio_weightingnone-learning_rate2e-05-seed0
+
+- Gold: `annotations/batches/batch-03.jsonl`, `annotations/batches/batch-06.jsonl` (dev split of `splits/pool-v1.json`; origin: all; 172 documents)
+- Predictions: `reports/neural/predictions/deberta-2-base-bio_weightingnone-learning_rate2e-05-seed0.jsonl` (deberta-2-base-bio_weightingnone-learning_rate2e-05-seed0)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 172 (155 with gold conditions, 17 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.000 | [0.000, 0.000] |
+| Exact span F1 | 0.000 | [0.000, 0.000] |
+| Exact span precision | 0.000 | [0.000, 0.000] |
+| Exact span recall | 0.000 | [0.000, 0.000] |
+| Role macro-F1 (roles with gold support) | 0.000 | [0.000, 0.000] |
+| Category macro-F1 | 0.000 | [0.000, 0.000] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents without conditions | 0.882 | [0.700, 1.000] |
+| False prerequisite rate (lower is better) | 0.955 | [0.894, 1.000] |
+| Reversed meaning rate (lower is better) | 0.429 | [0.000, 0.857] |
+| Category accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+| Role accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.000 | 0.000 | 0.000 | 323 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 17 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 18 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 28 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.000 | 0.000 | 0.000 | 36 |
+| USAGE | 0.000 | 0.000 | 0.000 | 186 |
+| ACCESS | 0.000 | 0.000 | 0.000 | 134 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 30 |
+
+## Precision versus coverage
+
+| Coverage | Confidence ≥ | Typed precision | Retained recall |
+|---:|---:|---:|---:|
+| 10% | 0.263 | 0.000 | 0.000 |
+| 20% | 0.237 | 0.000 | 0.000 |
+| 30% | 0.211 | 0.000 | 0.000 |
+| 40% | 0.194 | 0.000 | 0.000 |
+| 50% | 0.187 | 0.000 | 0.000 |
+| 60% | 0.171 | 0.000 | 0.000 |
+| 70% | 0.155 | 0.000 | 0.000 |
+| 80% | 0.143 | 0.000 | 0.000 |
+| 90% | 0.133 | 0.000 | 0.000 |
+| 100% | 0.103 | 0.000 | 0.000 |
diff --git a/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate2e-05-seed0_dev_manual.md b/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate2e-05-seed0_dev_manual.md
new file mode 100644
index 0000000..dd68c9e
--- /dev/null
+++ b/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate2e-05-seed0_dev_manual.md
@@ -0,0 +1,57 @@
+# Hand-labelled dev: deberta-2-base-bio_weightingnone-learning_rate2e-05-seed0
+
+- Gold: `annotations/pilot/pilot-2.jsonl` (dev split of `splits/pool-v1.json`; origin: manual; 10 documents)
+- Predictions: `reports/neural/predictions/deberta-2-base-bio_weightingnone-learning_rate2e-05-seed0.jsonl` (deberta-2-base-bio_weightingnone-learning_rate2e-05-seed0)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 10 (9 with gold conditions, 1 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.000 | [0.000, 0.000] |
+| Exact span F1 | 0.000 | [0.000, 0.000] |
+| Exact span precision | 0.000 | [0.000, 0.000] |
+| Exact span recall | 0.000 | [0.000, 0.000] |
+| Role macro-F1 (roles with gold support) | 0.000 | [0.000, 0.000] |
+| Category macro-F1 | 0.000 | [0.000, 0.000] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents without conditions | 1.000 | [0.000, 1.000] |
+| False prerequisite rate (lower is better) | 1.000 | [0.000, 1.000] |
+| Reversed meaning rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Category accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+| Role accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.000 | 0.000 | 0.000 | 16 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 0 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 0 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 1 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.000 | 0.000 | 0.000 | 1 |
+| USAGE | 0.000 | 0.000 | 0.000 | 9 |
+| ACCESS | 0.000 | 0.000 | 0.000 | 5 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 2 |
+
+## Precision versus coverage
+
+| Coverage | Confidence ≥ | Typed precision | Retained recall |
+|---:|---:|---:|---:|
+| 17% | 0.299 | 0.000 | 0.000 |
+| 17% | 0.299 | 0.000 | 0.000 |
+| 33% | 0.233 | 0.000 | 0.000 |
+| 33% | 0.233 | 0.000 | 0.000 |
+| 50% | 0.216 | 0.000 | 0.000 |
+| 67% | 0.205 | 0.000 | 0.000 |
+| 67% | 0.205 | 0.000 | 0.000 |
+| 83% | 0.196 | 0.000 | 0.000 |
+| 83% | 0.196 | 0.000 | 0.000 |
+| 100% | 0.109 | 0.000 | 0.000 |
diff --git a/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate2e-05-seed1_dev_agreement.md b/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate2e-05-seed1_dev_agreement.md
new file mode 100644
index 0000000..99d8bdd
--- /dev/null
+++ b/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate2e-05-seed1_dev_agreement.md
@@ -0,0 +1,57 @@
+# Agreement with model drafts: deberta-2-base-bio_weightingnone-learning_rate2e-05-seed1
+
+- Gold: `annotations/batches/batch-03.jsonl`, `annotations/batches/batch-06.jsonl` (dev split of `splits/pool-v1.json`; origin: all; 172 documents)
+- Predictions: `reports/neural/predictions/deberta-2-base-bio_weightingnone-learning_rate2e-05-seed1.jsonl` (deberta-2-base-bio_weightingnone-learning_rate2e-05-seed1)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 172 (155 with gold conditions, 17 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.000 | [0.000, 0.000] |
+| Exact span F1 | 0.000 | [0.000, 0.000] |
+| Exact span precision | 0.000 | [0.000, 0.000] |
+| Exact span recall | 0.000 | [0.000, 0.000] |
+| Role macro-F1 (roles with gold support) | 0.000 | [0.000, 0.000] |
+| Category macro-F1 | 0.000 | [0.000, 0.000] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents without conditions | 0.000 | [0.000, 0.000] |
+| False prerequisite rate (lower is better) | 0.937 | [0.883, 0.980] |
+| Reversed meaning rate (lower is better) | 0.090 | [0.016, 0.191] |
+| Category accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+| Role accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.000 | 0.000 | 0.000 | 323 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 17 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 18 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 28 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.000 | 0.000 | 0.000 | 36 |
+| USAGE | 0.000 | 0.000 | 0.000 | 186 |
+| ACCESS | 0.000 | 0.000 | 0.000 | 134 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 30 |
+
+## Precision versus coverage
+
+| Coverage | Confidence ≥ | Typed precision | Retained recall |
+|---:|---:|---:|---:|
+| 10% | 0.309 | 0.000 | 0.000 |
+| 20% | 0.273 | 0.000 | 0.000 |
+| 30% | 0.249 | 0.000 | 0.000 |
+| 40% | 0.231 | 0.000 | 0.000 |
+| 50% | 0.212 | 0.000 | 0.000 |
+| 60% | 0.197 | 0.000 | 0.000 |
+| 70% | 0.183 | 0.000 | 0.000 |
+| 80% | 0.169 | 0.000 | 0.000 |
+| 90% | 0.154 | 0.000 | 0.000 |
+| 100% | 0.101 | 0.000 | 0.000 |
diff --git a/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate2e-05-seed1_dev_manual.md b/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate2e-05-seed1_dev_manual.md
new file mode 100644
index 0000000..809c38a
--- /dev/null
+++ b/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate2e-05-seed1_dev_manual.md
@@ -0,0 +1,57 @@
+# Hand-labelled dev: deberta-2-base-bio_weightingnone-learning_rate2e-05-seed1
+
+- Gold: `annotations/pilot/pilot-2.jsonl` (dev split of `splits/pool-v1.json`; origin: manual; 10 documents)
+- Predictions: `reports/neural/predictions/deberta-2-base-bio_weightingnone-learning_rate2e-05-seed1.jsonl` (deberta-2-base-bio_weightingnone-learning_rate2e-05-seed1)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 10 (9 with gold conditions, 1 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.000 | [0.000, 0.000] |
+| Exact span F1 | 0.000 | [0.000, 0.000] |
+| Exact span precision | 0.000 | [0.000, 0.000] |
+| Exact span recall | 0.000 | [0.000, 0.000] |
+| Role macro-F1 (roles with gold support) | 0.000 | [0.000, 0.000] |
+| Category macro-F1 | 0.000 | [0.000, 0.000] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents without conditions | 0.000 | [0.000, 0.000] |
+| False prerequisite rate (lower is better) | 0.857 | [0.000, 1.000] |
+| Reversed meaning rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Category accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+| Role accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.000 | 0.000 | 0.000 | 16 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 0 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 0 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 1 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.000 | 0.000 | 0.000 | 1 |
+| USAGE | 0.000 | 0.000 | 0.000 | 9 |
+| ACCESS | 0.000 | 0.000 | 0.000 | 5 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 2 |
+
+## Precision versus coverage
+
+| Coverage | Confidence ≥ | Typed precision | Retained recall |
+|---:|---:|---:|---:|
+| 11% | 0.271 | 0.000 | 0.000 |
+| 19% | 0.254 | 0.000 | 0.000 |
+| 30% | 0.246 | 0.000 | 0.000 |
+| 40% | 0.215 | 0.000 | 0.000 |
+| 49% | 0.201 | 0.000 | 0.000 |
+| 60% | 0.192 | 0.000 | 0.000 |
+| 70% | 0.181 | 0.000 | 0.000 |
+| 81% | 0.172 | 0.000 | 0.000 |
+| 89% | 0.160 | 0.000 | 0.000 |
+| 100% | 0.129 | 0.000 | 0.000 |
diff --git a/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate2e-05-seed2_dev_agreement.md b/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate2e-05-seed2_dev_agreement.md
new file mode 100644
index 0000000..116b33d
--- /dev/null
+++ b/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate2e-05-seed2_dev_agreement.md
@@ -0,0 +1,57 @@
+# Agreement with model drafts: deberta-2-base-bio_weightingnone-learning_rate2e-05-seed2
+
+- Gold: `annotations/batches/batch-03.jsonl`, `annotations/batches/batch-06.jsonl` (dev split of `splits/pool-v1.json`; origin: all; 172 documents)
+- Predictions: `reports/neural/predictions/deberta-2-base-bio_weightingnone-learning_rate2e-05-seed2.jsonl` (deberta-2-base-bio_weightingnone-learning_rate2e-05-seed2)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 172 (155 with gold conditions, 17 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.000 | [0.000, 0.000] |
+| Exact span F1 | 0.000 | [0.000, 0.000] |
+| Exact span precision | 0.000 | [0.000, 0.000] |
+| Exact span recall | 0.000 | [0.000, 0.000] |
+| Role macro-F1 (roles with gold support) | 0.000 | [0.000, 0.000] |
+| Category macro-F1 | 0.000 | [0.000, 0.000] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents without conditions | 0.294 | [0.000, 0.542] |
+| False prerequisite rate (lower is better) | 0.959 | [0.934, 0.978] |
+| Reversed meaning rate (lower is better) | 0.472 | [0.294, 0.657] |
+| Category accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+| Role accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.000 | 0.000 | 0.000 | 323 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 17 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 18 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 28 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.000 | 0.000 | 0.000 | 36 |
+| USAGE | 0.000 | 0.000 | 0.000 | 186 |
+| ACCESS | 0.000 | 0.000 | 0.000 | 134 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 30 |
+
+## Precision versus coverage
+
+| Coverage | Confidence ≥ | Typed precision | Retained recall |
+|---:|---:|---:|---:|
+| 10% | 0.252 | 0.000 | 0.000 |
+| 20% | 0.227 | 0.000 | 0.000 |
+| 30% | 0.210 | 0.000 | 0.000 |
+| 40% | 0.194 | 0.000 | 0.000 |
+| 50% | 0.181 | 0.000 | 0.000 |
+| 60% | 0.172 | 0.000 | 0.000 |
+| 70% | 0.164 | 0.000 | 0.000 |
+| 80% | 0.151 | 0.000 | 0.000 |
+| 90% | 0.137 | 0.000 | 0.000 |
+| 100% | 0.104 | 0.000 | 0.000 |
diff --git a/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate2e-05-seed2_dev_manual.md b/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate2e-05-seed2_dev_manual.md
new file mode 100644
index 0000000..e68a8ca
--- /dev/null
+++ b/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate2e-05-seed2_dev_manual.md
@@ -0,0 +1,57 @@
+# Hand-labelled dev: deberta-2-base-bio_weightingnone-learning_rate2e-05-seed2
+
+- Gold: `annotations/pilot/pilot-2.jsonl` (dev split of `splits/pool-v1.json`; origin: manual; 10 documents)
+- Predictions: `reports/neural/predictions/deberta-2-base-bio_weightingnone-learning_rate2e-05-seed2.jsonl` (deberta-2-base-bio_weightingnone-learning_rate2e-05-seed2)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 10 (9 with gold conditions, 1 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.000 | [0.000, 0.000] |
+| Exact span F1 | 0.000 | [0.000, 0.000] |
+| Exact span precision | 0.000 | [0.000, 0.000] |
+| Exact span recall | 0.000 | [0.000, 0.000] |
+| Role macro-F1 (roles with gold support) | 0.000 | [0.000, 0.000] |
+| Category macro-F1 | 0.000 | [0.000, 0.000] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents without conditions | 1.000 | [0.000, 1.000] |
+| False prerequisite rate (lower is better) | 0.944 | [0.333, 1.000] |
+| Reversed meaning rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Category accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+| Role accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.000 | 0.000 | 0.000 | 16 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 0 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 0 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 1 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.000 | 0.000 | 0.000 | 1 |
+| USAGE | 0.000 | 0.000 | 0.000 | 9 |
+| ACCESS | 0.000 | 0.000 | 0.000 | 5 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 2 |
+
+## Precision versus coverage
+
+| Coverage | Confidence ≥ | Typed precision | Retained recall |
+|---:|---:|---:|---:|
+| 8% | 0.303 | 0.000 | 0.000 |
+| 21% | 0.229 | 0.000 | 0.000 |
+| 29% | 0.224 | 0.000 | 0.000 |
+| 42% | 0.195 | 0.000 | 0.000 |
+| 50% | 0.176 | 0.000 | 0.000 |
+| 58% | 0.174 | 0.000 | 0.000 |
+| 71% | 0.164 | 0.000 | 0.000 |
+| 79% | 0.161 | 0.000 | 0.000 |
+| 92% | 0.145 | 0.000 | 0.000 |
+| 100% | 0.129 | 0.000 | 0.000 |
diff --git a/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate5e-05-seed0_dev_agreement.md b/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate5e-05-seed0_dev_agreement.md
new file mode 100644
index 0000000..90e8ea2
--- /dev/null
+++ b/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate5e-05-seed0_dev_agreement.md
@@ -0,0 +1,42 @@
+# Agreement with model drafts: deberta-2-base-bio_weightingnone-learning_rate5e-05-seed0
+
+- Gold: `annotations/batches/batch-03.jsonl`, `annotations/batches/batch-06.jsonl` (dev split of `splits/pool-v1.json`; origin: all; 172 documents)
+- Predictions: `reports/neural/predictions/deberta-2-base-bio_weightingnone-learning_rate5e-05-seed0.jsonl` (deberta-2-base-bio_weightingnone-learning_rate5e-05-seed0)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 172 (155 with gold conditions, 17 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.000 | [0.000, 0.000] |
+| Exact span F1 | 0.000 | [0.000, 0.000] |
+| Exact span precision | 0.000 | [0.000, 0.000] |
+| Exact span recall | 0.000 | [0.000, 0.000] |
+| Role macro-F1 (roles with gold support) | 0.000 | [0.000, 0.000] |
+| Category macro-F1 | 0.000 | [0.000, 0.000] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents without conditions | 1.000 | [1.000, 1.000] |
+| False prerequisite rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Reversed meaning rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Category accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+| Role accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.000 | 0.000 | 0.000 | 323 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 17 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 18 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 28 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.000 | 0.000 | 0.000 | 36 |
+| USAGE | 0.000 | 0.000 | 0.000 | 186 |
+| ACCESS | 0.000 | 0.000 | 0.000 | 134 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 30 |
diff --git a/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate5e-05-seed0_dev_manual.md b/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate5e-05-seed0_dev_manual.md
new file mode 100644
index 0000000..ef54816
--- /dev/null
+++ b/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate5e-05-seed0_dev_manual.md
@@ -0,0 +1,42 @@
+# Hand-labelled dev: deberta-2-base-bio_weightingnone-learning_rate5e-05-seed0
+
+- Gold: `annotations/pilot/pilot-2.jsonl` (dev split of `splits/pool-v1.json`; origin: manual; 10 documents)
+- Predictions: `reports/neural/predictions/deberta-2-base-bio_weightingnone-learning_rate5e-05-seed0.jsonl` (deberta-2-base-bio_weightingnone-learning_rate5e-05-seed0)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 10 (9 with gold conditions, 1 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.000 | [0.000, 0.000] |
+| Exact span F1 | 0.000 | [0.000, 0.000] |
+| Exact span precision | 0.000 | [0.000, 0.000] |
+| Exact span recall | 0.000 | [0.000, 0.000] |
+| Role macro-F1 (roles with gold support) | 0.000 | [0.000, 0.000] |
+| Category macro-F1 | 0.000 | [0.000, 0.000] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents without conditions | 1.000 | [0.000, 1.000] |
+| False prerequisite rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Reversed meaning rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Category accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+| Role accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.000 | 0.000 | 0.000 | 16 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 0 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 0 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 1 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.000 | 0.000 | 0.000 | 1 |
+| USAGE | 0.000 | 0.000 | 0.000 | 9 |
+| ACCESS | 0.000 | 0.000 | 0.000 | 5 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 2 |
diff --git a/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate5e-05-seed1_dev_agreement.md b/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate5e-05-seed1_dev_agreement.md
new file mode 100644
index 0000000..a356684
--- /dev/null
+++ b/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate5e-05-seed1_dev_agreement.md
@@ -0,0 +1,42 @@
+# Agreement with model drafts: deberta-2-base-bio_weightingnone-learning_rate5e-05-seed1
+
+- Gold: `annotations/batches/batch-03.jsonl`, `annotations/batches/batch-06.jsonl` (dev split of `splits/pool-v1.json`; origin: all; 172 documents)
+- Predictions: `reports/neural/predictions/deberta-2-base-bio_weightingnone-learning_rate5e-05-seed1.jsonl` (deberta-2-base-bio_weightingnone-learning_rate5e-05-seed1)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 172 (155 with gold conditions, 17 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.000 | [0.000, 0.000] |
+| Exact span F1 | 0.000 | [0.000, 0.000] |
+| Exact span precision | 0.000 | [0.000, 0.000] |
+| Exact span recall | 0.000 | [0.000, 0.000] |
+| Role macro-F1 (roles with gold support) | 0.000 | [0.000, 0.000] |
+| Category macro-F1 | 0.000 | [0.000, 0.000] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents without conditions | 1.000 | [1.000, 1.000] |
+| False prerequisite rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Reversed meaning rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Category accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+| Role accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.000 | 0.000 | 0.000 | 323 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 17 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 18 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 28 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.000 | 0.000 | 0.000 | 36 |
+| USAGE | 0.000 | 0.000 | 0.000 | 186 |
+| ACCESS | 0.000 | 0.000 | 0.000 | 134 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 30 |
diff --git a/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate5e-05-seed1_dev_manual.md b/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate5e-05-seed1_dev_manual.md
new file mode 100644
index 0000000..b3bbd0c
--- /dev/null
+++ b/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate5e-05-seed1_dev_manual.md
@@ -0,0 +1,42 @@
+# Hand-labelled dev: deberta-2-base-bio_weightingnone-learning_rate5e-05-seed1
+
+- Gold: `annotations/pilot/pilot-2.jsonl` (dev split of `splits/pool-v1.json`; origin: manual; 10 documents)
+- Predictions: `reports/neural/predictions/deberta-2-base-bio_weightingnone-learning_rate5e-05-seed1.jsonl` (deberta-2-base-bio_weightingnone-learning_rate5e-05-seed1)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 10 (9 with gold conditions, 1 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.000 | [0.000, 0.000] |
+| Exact span F1 | 0.000 | [0.000, 0.000] |
+| Exact span precision | 0.000 | [0.000, 0.000] |
+| Exact span recall | 0.000 | [0.000, 0.000] |
+| Role macro-F1 (roles with gold support) | 0.000 | [0.000, 0.000] |
+| Category macro-F1 | 0.000 | [0.000, 0.000] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents without conditions | 1.000 | [0.000, 1.000] |
+| False prerequisite rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Reversed meaning rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Category accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+| Role accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.000 | 0.000 | 0.000 | 16 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 0 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 0 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 1 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.000 | 0.000 | 0.000 | 1 |
+| USAGE | 0.000 | 0.000 | 0.000 | 9 |
+| ACCESS | 0.000 | 0.000 | 0.000 | 5 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 2 |
diff --git a/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate5e-05-seed2_dev_agreement.md b/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate5e-05-seed2_dev_agreement.md
new file mode 100644
index 0000000..7d52dee
--- /dev/null
+++ b/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate5e-05-seed2_dev_agreement.md
@@ -0,0 +1,42 @@
+# Agreement with model drafts: deberta-2-base-bio_weightingnone-learning_rate5e-05-seed2
+
+- Gold: `annotations/batches/batch-03.jsonl`, `annotations/batches/batch-06.jsonl` (dev split of `splits/pool-v1.json`; origin: all; 172 documents)
+- Predictions: `reports/neural/predictions/deberta-2-base-bio_weightingnone-learning_rate5e-05-seed2.jsonl` (deberta-2-base-bio_weightingnone-learning_rate5e-05-seed2)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 172 (155 with gold conditions, 17 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.000 | [0.000, 0.000] |
+| Exact span F1 | 0.000 | [0.000, 0.000] |
+| Exact span precision | 0.000 | [0.000, 0.000] |
+| Exact span recall | 0.000 | [0.000, 0.000] |
+| Role macro-F1 (roles with gold support) | 0.000 | [0.000, 0.000] |
+| Category macro-F1 | 0.000 | [0.000, 0.000] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents without conditions | 1.000 | [1.000, 1.000] |
+| False prerequisite rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Reversed meaning rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Category accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+| Role accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.000 | 0.000 | 0.000 | 323 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 17 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 18 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 28 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.000 | 0.000 | 0.000 | 36 |
+| USAGE | 0.000 | 0.000 | 0.000 | 186 |
+| ACCESS | 0.000 | 0.000 | 0.000 | 134 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 30 |
diff --git a/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate5e-05-seed2_dev_manual.md b/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate5e-05-seed2_dev_manual.md
new file mode 100644
index 0000000..bc2493d
--- /dev/null
+++ b/reports/neural/run-2/deberta-2-base-bio_weightingnone-learning_rate5e-05-seed2_dev_manual.md
@@ -0,0 +1,42 @@
+# Hand-labelled dev: deberta-2-base-bio_weightingnone-learning_rate5e-05-seed2
+
+- Gold: `annotations/pilot/pilot-2.jsonl` (dev split of `splits/pool-v1.json`; origin: manual; 10 documents)
+- Predictions: `reports/neural/predictions/deberta-2-base-bio_weightingnone-learning_rate5e-05-seed2.jsonl` (deberta-2-base-bio_weightingnone-learning_rate5e-05-seed2)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 10 (9 with gold conditions, 1 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.000 | [0.000, 0.000] |
+| Exact span F1 | 0.000 | [0.000, 0.000] |
+| Exact span precision | 0.000 | [0.000, 0.000] |
+| Exact span recall | 0.000 | [0.000, 0.000] |
+| Role macro-F1 (roles with gold support) | 0.000 | [0.000, 0.000] |
+| Category macro-F1 | 0.000 | [0.000, 0.000] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents without conditions | 1.000 | [0.000, 1.000] |
+| False prerequisite rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Reversed meaning rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Category accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+| Role accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.000 | 0.000 | 0.000 | 16 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 0 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 0 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 1 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.000 | 0.000 | 0.000 | 1 |
+| USAGE | 0.000 | 0.000 | 0.000 | 9 |
+| ACCESS | 0.000 | 0.000 | 0.000 | 5 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 2 |
diff --git a/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed0_dev_agreement.md b/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed0_dev_agreement.md
new file mode 100644
index 0000000..efce650
--- /dev/null
+++ b/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed0_dev_agreement.md
@@ -0,0 +1,57 @@
+# Agreement with model drafts: deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed0
+
+- Gold: `annotations/batches/batch-03.jsonl`, `annotations/batches/batch-06.jsonl` (dev split of `splits/pool-v1.json`; origin: all; 172 documents)
+- Predictions: `reports/neural/predictions/deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed0.jsonl` (deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed0)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 172 (155 with gold conditions, 17 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.072 | [0.055, 0.093] |
+| Exact span F1 | 0.089 | [0.071, 0.111] |
+| Exact span precision | 0.055 | [0.043, 0.070] |
+| Exact span recall | 0.238 | [0.197, 0.281] |
+| Role macro-F1 (roles with gold support) | 0.036 | [0.022, 0.058] |
+| Category macro-F1 | 0.072 | [0.050, 0.098] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents without conditions | 0.353 | [0.125, 0.636] |
+| False prerequisite rate (lower is better) | 0.661 | [0.624, 0.693] |
+| Reversed meaning rate (lower is better) | 0.046 | [0.018, 0.083] |
+| Category accuracy on exactly matched spans | 0.891 | [0.817, 0.952] |
+| Role accuracy on exactly matched spans | 0.913 | [0.846, 0.974] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.060 | 0.251 | 0.097 | 323 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 17 |
+| NOT_REQUIRED | 0.021 | 0.111 | 0.035 | 18 |
+| UNCERTAIN | 0.006 | 0.036 | 0.010 | 28 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.056 | 0.222 | 0.089 | 36 |
+| USAGE | 0.047 | 0.237 | 0.079 | 186 |
+| ACCESS | 0.067 | 0.209 | 0.101 | 134 |
+| PLATFORM | 0.011 | 0.067 | 0.019 | 30 |
+
+## Precision versus coverage
+
+| Coverage | Confidence ≥ | Typed precision | Retained recall |
+|---:|---:|---:|---:|
+| 10% | 0.559 | 0.090 | 0.039 |
+| 20% | 0.509 | 0.075 | 0.065 |
+| 30% | 0.479 | 0.074 | 0.096 |
+| 40% | 0.455 | 0.069 | 0.119 |
+| 50% | 0.429 | 0.066 | 0.142 |
+| 60% | 0.403 | 0.066 | 0.171 |
+| 70% | 0.370 | 0.059 | 0.179 |
+| 80% | 0.326 | 0.053 | 0.184 |
+| 90% | 0.264 | 0.049 | 0.189 |
+| 100% | 0.132 | 0.044 | 0.192 |
diff --git a/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed0_dev_manual.md b/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed0_dev_manual.md
new file mode 100644
index 0000000..c676972
--- /dev/null
+++ b/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed0_dev_manual.md
@@ -0,0 +1,57 @@
+# Hand-labelled dev: deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed0
+
+- Gold: `annotations/pilot/pilot-2.jsonl` (dev split of `splits/pool-v1.json`; origin: manual; 10 documents)
+- Predictions: `reports/neural/predictions/deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed0.jsonl` (deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed0)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 10 (9 with gold conditions, 1 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.163 | [0.087, 0.272] |
+| Exact span F1 | 0.186 | [0.100, 0.296] |
+| Exact span precision | 0.116 | [0.060, 0.196] |
+| Exact span recall | 0.471 | [0.308, 0.611] |
+| Role macro-F1 (roles with gold support) | 0.114 | [0.067, 0.319] |
+| Category macro-F1 | 0.144 | [0.047, 0.308] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents without conditions | 0.000 | [0.000, 0.000] |
+| False prerequisite rate (lower is better) | 0.667 | [0.478, 0.792] |
+| Reversed meaning rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Category accuracy on exactly matched spans | 0.875 | [0.667, 1.000] |
+| Role accuracy on exactly matched spans | 1.000 | [1.000, 1.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.148 | 0.500 | 0.229 | 16 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 0 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 0 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 1 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.000 | 0.000 | 0.000 | 1 |
+| USAGE | 0.087 | 0.444 | 0.145 | 9 |
+| ACCESS | 0.333 | 0.600 | 0.429 | 5 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 2 |
+
+## Precision versus coverage
+
+| Coverage | Confidence ≥ | Typed precision | Retained recall |
+|---:|---:|---:|---:|
+| 10% | 0.597 | 0.143 | 0.059 |
+| 20% | 0.548 | 0.071 | 0.059 |
+| 30% | 0.511 | 0.095 | 0.118 |
+| 41% | 0.490 | 0.107 | 0.176 |
+| 49% | 0.468 | 0.088 | 0.176 |
+| 59% | 0.442 | 0.122 | 0.294 |
+| 70% | 0.420 | 0.125 | 0.353 |
+| 80% | 0.362 | 0.127 | 0.412 |
+| 90% | 0.269 | 0.113 | 0.412 |
+| 100% | 0.191 | 0.101 | 0.412 |
diff --git a/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed1_dev_agreement.md b/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed1_dev_agreement.md
new file mode 100644
index 0000000..2f51a7d
--- /dev/null
+++ b/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed1_dev_agreement.md
@@ -0,0 +1,57 @@
+# Agreement with model drafts: deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed1
+
+- Gold: `annotations/batches/batch-03.jsonl`, `annotations/batches/batch-06.jsonl` (dev split of `splits/pool-v1.json`; origin: all; 172 documents)
+- Predictions: `reports/neural/predictions/deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed1.jsonl` (deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed1)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 172 (155 with gold conditions, 17 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.077 | [0.059, 0.100] |
+| Exact span F1 | 0.098 | [0.078, 0.121] |
+| Exact span precision | 0.062 | [0.048, 0.077] |
+| Exact span recall | 0.244 | [0.200, 0.291] |
+| Role macro-F1 (roles with gold support) | 0.041 | [0.027, 0.061] |
+| Category macro-F1 | 0.071 | [0.051, 0.093] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.019 | [0.000, 0.042] |
+| Complete-document exact match, documents without conditions | 0.235 | [0.056, 0.500] |
+| False prerequisite rate (lower is better) | 0.658 | [0.614, 0.690] |
+| Reversed meaning rate (lower is better) | 0.044 | [0.013, 0.085] |
+| Category accuracy on exactly matched spans | 0.862 | [0.780, 0.938] |
+| Role accuracy on exactly matched spans | 0.926 | [0.861, 0.979] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.067 | 0.260 | 0.106 | 323 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 17 |
+| NOT_REQUIRED | 0.033 | 0.111 | 0.051 | 18 |
+| UNCERTAIN | 0.005 | 0.036 | 0.009 | 28 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.063 | 0.250 | 0.101 | 36 |
+| USAGE | 0.056 | 0.242 | 0.090 | 186 |
+| ACCESS | 0.059 | 0.201 | 0.091 | 134 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 30 |
+
+## Precision versus coverage
+
+| Coverage | Confidence ≥ | Typed precision | Retained recall |
+|---:|---:|---:|---:|
+| 10% | 0.530 | 0.065 | 0.026 |
+| 20% | 0.488 | 0.079 | 0.062 |
+| 30% | 0.460 | 0.072 | 0.085 |
+| 40% | 0.436 | 0.077 | 0.122 |
+| 50% | 0.408 | 0.076 | 0.150 |
+| 60% | 0.383 | 0.068 | 0.161 |
+| 70% | 0.352 | 0.063 | 0.174 |
+| 80% | 0.320 | 0.057 | 0.181 |
+| 90% | 0.269 | 0.053 | 0.189 |
+| 100% | 0.114 | 0.048 | 0.192 |
diff --git a/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed1_dev_manual.md b/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed1_dev_manual.md
new file mode 100644
index 0000000..fe34917
--- /dev/null
+++ b/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed1_dev_manual.md
@@ -0,0 +1,57 @@
+# Hand-labelled dev: deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed1
+
+- Gold: `annotations/pilot/pilot-2.jsonl` (dev split of `splits/pool-v1.json`; origin: manual; 10 documents)
+- Predictions: `reports/neural/predictions/deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed1.jsonl` (deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed1)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 10 (9 with gold conditions, 1 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.157 | [0.069, 0.259] |
+| Exact span F1 | 0.157 | [0.069, 0.259] |
+| Exact span precision | 0.097 | [0.041, 0.172] |
+| Exact span recall | 0.412 | [0.214, 0.636] |
+| Role macro-F1 (roles with gold support) | 0.092 | [0.045, 0.275] |
+| Category macro-F1 | 0.129 | [0.070, 0.261] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.111 | [0.000, 0.300] |
+| Complete-document exact match, documents without conditions | 0.000 | [0.000, 0.000] |
+| False prerequisite rate (lower is better) | 0.650 | [0.492, 0.774] |
+| Reversed meaning rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Category accuracy on exactly matched spans | 1.000 | [1.000, 1.000] |
+| Role accuracy on exactly matched spans | 1.000 | [1.000, 1.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.117 | 0.438 | 0.184 | 16 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 0 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 0 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 1 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.000 | 0.000 | 0.000 | 1 |
+| USAGE | 0.114 | 0.444 | 0.182 | 9 |
+| ACCESS | 0.231 | 0.600 | 0.333 | 5 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 2 |
+
+## Precision versus coverage
+
+| Coverage | Confidence ≥ | Typed precision | Retained recall |
+|---:|---:|---:|---:|
+| 10% | 0.548 | 0.286 | 0.118 |
+| 19% | 0.504 | 0.286 | 0.235 |
+| 31% | 0.478 | 0.227 | 0.294 |
+| 40% | 0.447 | 0.172 | 0.294 |
+| 50% | 0.405 | 0.167 | 0.353 |
+| 60% | 0.386 | 0.163 | 0.412 |
+| 69% | 0.369 | 0.140 | 0.412 |
+| 81% | 0.329 | 0.121 | 0.412 |
+| 90% | 0.264 | 0.108 | 0.412 |
+| 100% | 0.169 | 0.097 | 0.412 |
diff --git a/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed2_dev_agreement.md b/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed2_dev_agreement.md
new file mode 100644
index 0000000..ed4d5fd
--- /dev/null
+++ b/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed2_dev_agreement.md
@@ -0,0 +1,57 @@
+# Agreement with model drafts: deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed2
+
+- Gold: `annotations/batches/batch-03.jsonl`, `annotations/batches/batch-06.jsonl` (dev split of `splits/pool-v1.json`; origin: all; 172 documents)
+- Predictions: `reports/neural/predictions/deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed2.jsonl` (deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed2)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 172 (155 with gold conditions, 17 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.070 | [0.051, 0.096] |
+| Exact span F1 | 0.090 | [0.071, 0.116] |
+| Exact span precision | 0.054 | [0.042, 0.071] |
+| Exact span recall | 0.269 | [0.225, 0.321] |
+| Role macro-F1 (roles with gold support) | 0.040 | [0.023, 0.065] |
+| Category macro-F1 | 0.071 | [0.054, 0.095] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.013 | [0.000, 0.033] |
+| Complete-document exact match, documents without conditions | 0.235 | [0.056, 0.500] |
+| False prerequisite rate (lower is better) | 0.701 | [0.668, 0.733] |
+| Reversed meaning rate (lower is better) | 0.066 | [0.019, 0.128] |
+| Category accuracy on exactly matched spans | 0.885 | [0.809, 0.957] |
+| Role accuracy on exactly matched spans | 0.885 | [0.795, 0.959] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.059 | 0.276 | 0.098 | 323 |
+| EXCEPTION | 0.019 | 0.059 | 0.028 | 17 |
+| NOT_REQUIRED | 0.020 | 0.111 | 0.034 | 18 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 28 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.058 | 0.306 | 0.098 | 36 |
+| USAGE | 0.047 | 0.269 | 0.079 | 186 |
+| ACCESS | 0.063 | 0.224 | 0.098 | 134 |
+| PLATFORM | 0.006 | 0.033 | 0.010 | 30 |
+
+## Precision versus coverage
+
+| Coverage | Confidence ≥ | Typed precision | Retained recall |
+|---:|---:|---:|---:|
+| 10% | 0.546 | 0.037 | 0.018 |
+| 20% | 0.496 | 0.070 | 0.070 |
+| 30% | 0.462 | 0.070 | 0.104 |
+| 40% | 0.433 | 0.060 | 0.119 |
+| 50% | 0.405 | 0.055 | 0.137 |
+| 60% | 0.377 | 0.059 | 0.176 |
+| 70% | 0.344 | 0.054 | 0.187 |
+| 80% | 0.307 | 0.049 | 0.194 |
+| 90% | 0.256 | 0.045 | 0.202 |
+| 100% | 0.134 | 0.042 | 0.207 |
diff --git a/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed2_dev_manual.md b/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed2_dev_manual.md
new file mode 100644
index 0000000..e1aaf01
--- /dev/null
+++ b/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed2_dev_manual.md
@@ -0,0 +1,57 @@
+# Hand-labelled dev: deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed2
+
+- Gold: `annotations/pilot/pilot-2.jsonl` (dev split of `splits/pool-v1.json`; origin: manual; 10 documents)
+- Predictions: `reports/neural/predictions/deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed2.jsonl` (deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed2)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 10 (9 with gold conditions, 1 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.143 | [0.056, 0.239] |
+| Exact span F1 | 0.163 | [0.091, 0.250] |
+| Exact span precision | 0.099 | [0.053, 0.164] |
+| Exact span recall | 0.471 | [0.308, 0.615] |
+| Role macro-F1 (roles with gold support) | 0.104 | [0.056, 0.323] |
+| Category macro-F1 | 0.087 | [0.034, 0.176] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.111 | [0.000, 0.300] |
+| Complete-document exact match, documents without conditions | 0.000 | [0.000, 0.000] |
+| False prerequisite rate (lower is better) | 0.721 | [0.576, 0.810] |
+| Reversed meaning rate (lower is better) | 0.056 | [0.000, 0.188] |
+| Category accuracy on exactly matched spans | 0.875 | [0.500, 1.000] |
+| Role accuracy on exactly matched spans | 1.000 | [1.000, 1.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.131 | 0.500 | 0.208 | 16 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 0 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 0 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 1 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.000 | 0.000 | 0.000 | 1 |
+| USAGE | 0.093 | 0.556 | 0.159 | 9 |
+| ACCESS | 0.125 | 0.400 | 0.190 | 5 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 2 |
+
+## Precision versus coverage
+
+| Coverage | Confidence ≥ | Typed precision | Retained recall |
+|---:|---:|---:|---:|
+| 10% | 0.552 | 0.125 | 0.059 |
+| 20% | 0.518 | 0.125 | 0.118 |
+| 30% | 0.475 | 0.125 | 0.176 |
+| 40% | 0.452 | 0.156 | 0.294 |
+| 49% | 0.442 | 0.125 | 0.294 |
+| 60% | 0.402 | 0.122 | 0.353 |
+| 70% | 0.370 | 0.123 | 0.412 |
+| 80% | 0.328 | 0.108 | 0.412 |
+| 90% | 0.256 | 0.096 | 0.412 |
+| 100% | 0.176 | 0.086 | 0.412 |
diff --git a/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0_dev_agreement.md b/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0_dev_agreement.md
new file mode 100644
index 0000000..39148e8
--- /dev/null
+++ b/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0_dev_agreement.md
@@ -0,0 +1,57 @@
+# Agreement with model drafts: deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0
+
+- Gold: `annotations/batches/batch-03.jsonl`, `annotations/batches/batch-06.jsonl` (dev split of `splits/pool-v1.json`; origin: all; 172 documents)
+- Predictions: `reports/neural/predictions/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0.jsonl` (deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 172 (155 with gold conditions, 17 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.133 | [0.108, 0.164] |
+| Exact span F1 | 0.165 | [0.142, 0.194] |
+| Exact span precision | 0.108 | [0.090, 0.131] |
+| Exact span recall | 0.355 | [0.314, 0.397] |
+| Role macro-F1 (roles with gold support) | 0.087 | [0.059, 0.120] |
+| Category macro-F1 | 0.129 | [0.100, 0.161] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.026 | [0.006, 0.051] |
+| Complete-document exact match, documents without conditions | 0.176 | [0.000, 0.400] |
+| False prerequisite rate (lower is better) | 0.607 | [0.565, 0.640] |
+| Reversed meaning rate (lower is better) | 0.053 | [0.016, 0.101] |
+| Category accuracy on exactly matched spans | 0.898 | [0.836, 0.949] |
+| Role accuracy on exactly matched spans | 0.905 | [0.829, 0.970] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.117 | 0.359 | 0.177 | 323 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 17 |
+| NOT_REQUIRED | 0.105 | 0.444 | 0.170 | 18 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 28 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.073 | 0.250 | 0.113 | 36 |
+| USAGE | 0.096 | 0.366 | 0.152 | 186 |
+| ACCESS | 0.147 | 0.306 | 0.199 | 134 |
+| PLATFORM | 0.030 | 0.167 | 0.051 | 30 |
+
+## Precision versus coverage
+
+| Coverage | Confidence ≥ | Typed precision | Retained recall |
+|---:|---:|---:|---:|
+| 10% | 0.727 | 0.276 | 0.091 |
+| 20% | 0.635 | 0.192 | 0.127 |
+| 30% | 0.579 | 0.165 | 0.163 |
+| 40% | 0.543 | 0.139 | 0.184 |
+| 50% | 0.504 | 0.130 | 0.215 |
+| 60% | 0.478 | 0.122 | 0.241 |
+| 70% | 0.434 | 0.109 | 0.251 |
+| 80% | 0.381 | 0.102 | 0.269 |
+| 90% | 0.315 | 0.094 | 0.280 |
+| 100% | 0.146 | 0.086 | 0.285 |
diff --git a/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0_dev_manual.md b/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0_dev_manual.md
new file mode 100644
index 0000000..b0098cf
--- /dev/null
+++ b/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0_dev_manual.md
@@ -0,0 +1,57 @@
+# Hand-labelled dev: deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0
+
+- Gold: `annotations/pilot/pilot-2.jsonl` (dev split of `splits/pool-v1.json`; origin: manual; 10 documents)
+- Predictions: `reports/neural/predictions/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0.jsonl` (deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 10 (9 with gold conditions, 1 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.265 | [0.174, 0.400] |
+| Exact span F1 | 0.294 | [0.208, 0.462] |
+| Exact span precision | 0.196 | [0.130, 0.342] |
+| Exact span recall | 0.588 | [0.450, 0.778] |
+| Role macro-F1 (roles with gold support) | 0.158 | [0.118, 0.417] |
+| Category macro-F1 | 0.285 | [0.221, 0.563] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents without conditions | 1.000 | [0.000, 1.000] |
+| False prerequisite rate (lower is better) | 0.683 | [0.500, 0.791] |
+| Reversed meaning rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Category accuracy on exactly matched spans | 1.000 | [1.000, 1.000] |
+| Role accuracy on exactly matched spans | 0.900 | [0.667, 1.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.220 | 0.562 | 0.316 | 16 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 0 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 0 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 1 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.200 | 1.000 | 0.333 | 1 |
+| USAGE | 0.162 | 0.667 | 0.261 | 9 |
+| ACCESS | 0.500 | 0.600 | 0.545 | 5 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 2 |
+
+## Precision versus coverage
+
+| Coverage | Confidence ≥ | Typed precision | Retained recall |
+|---:|---:|---:|---:|
+| 10% | 0.831 | 0.600 | 0.176 |
+| 20% | 0.733 | 0.500 | 0.294 |
+| 29% | 0.648 | 0.400 | 0.353 |
+| 39% | 0.609 | 0.350 | 0.412 |
+| 51% | 0.527 | 0.308 | 0.471 |
+| 61% | 0.512 | 0.290 | 0.529 |
+| 71% | 0.470 | 0.250 | 0.529 |
+| 80% | 0.411 | 0.220 | 0.529 |
+| 90% | 0.318 | 0.196 | 0.529 |
+| 100% | 0.209 | 0.176 | 0.529 |
diff --git a/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed1_dev_agreement.md b/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed1_dev_agreement.md
new file mode 100644
index 0000000..f43a290
--- /dev/null
+++ b/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed1_dev_agreement.md
@@ -0,0 +1,57 @@
+# Agreement with model drafts: deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed1
+
+- Gold: `annotations/batches/batch-03.jsonl`, `annotations/batches/batch-06.jsonl` (dev split of `splits/pool-v1.json`; origin: all; 172 documents)
+- Predictions: `reports/neural/predictions/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed1.jsonl` (deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed1)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 172 (155 with gold conditions, 17 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.132 | [0.110, 0.160] |
+| Exact span F1 | 0.161 | [0.135, 0.188] |
+| Exact span precision | 0.108 | [0.089, 0.129] |
+| Exact span recall | 0.319 | [0.274, 0.365] |
+| Role macro-F1 (roles with gold support) | 0.069 | [0.050, 0.090] |
+| Category macro-F1 | 0.125 | [0.099, 0.156] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.039 | [0.013, 0.074] |
+| Complete-document exact match, documents without conditions | 0.353 | [0.143, 0.600] |
+| False prerequisite rate (lower is better) | 0.596 | [0.553, 0.634] |
+| Reversed meaning rate (lower is better) | 0.034 | [0.013, 0.060] |
+| Category accuracy on exactly matched spans | 0.894 | [0.829, 0.951] |
+| Role accuracy on exactly matched spans | 0.919 | [0.858, 0.981] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.113 | 0.334 | 0.168 | 323 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 17 |
+| NOT_REQUIRED | 0.066 | 0.278 | 0.106 | 18 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 28 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.096 | 0.306 | 0.147 | 36 |
+| USAGE | 0.100 | 0.339 | 0.154 | 186 |
+| ACCESS | 0.112 | 0.246 | 0.154 | 134 |
+| PLATFORM | 0.029 | 0.100 | 0.045 | 30 |
+
+## Precision versus coverage
+
+| Coverage | Confidence ≥ | Typed precision | Retained recall |
+|---:|---:|---:|---:|
+| 10% | 0.859 | 0.263 | 0.078 |
+| 20% | 0.766 | 0.170 | 0.101 |
+| 30% | 0.698 | 0.157 | 0.140 |
+| 40% | 0.637 | 0.151 | 0.179 |
+| 50% | 0.587 | 0.135 | 0.199 |
+| 60% | 0.547 | 0.120 | 0.212 |
+| 70% | 0.515 | 0.115 | 0.238 |
+| 80% | 0.479 | 0.105 | 0.249 |
+| 90% | 0.408 | 0.095 | 0.254 |
+| 100% | 0.210 | 0.088 | 0.262 |
diff --git a/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed1_dev_manual.md b/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed1_dev_manual.md
new file mode 100644
index 0000000..aa2c580
--- /dev/null
+++ b/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed1_dev_manual.md
@@ -0,0 +1,57 @@
+# Hand-labelled dev: deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed1
+
+- Gold: `annotations/pilot/pilot-2.jsonl` (dev split of `splits/pool-v1.json`; origin: manual; 10 documents)
+- Predictions: `reports/neural/predictions/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed1.jsonl` (deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed1)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 10 (9 with gold conditions, 1 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.241 | [0.083, 0.429] |
+| Exact span F1 | 0.310 | [0.189, 0.481] |
+| Exact span precision | 0.220 | [0.125, 0.389] |
+| Exact span recall | 0.529 | [0.375, 0.700] |
+| Role macro-F1 (roles with gold support) | 0.170 | [0.103, 0.453] |
+| Category macro-F1 | 0.213 | [0.108, 0.548] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.111 | [0.000, 0.300] |
+| Complete-document exact match, documents without conditions | 1.000 | [0.000, 1.000] |
+| False prerequisite rate (lower is better) | 0.452 | [0.278, 0.647] |
+| Reversed meaning rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Category accuracy on exactly matched spans | 0.889 | [0.571, 1.000] |
+| Role accuracy on exactly matched spans | 0.889 | [0.600, 1.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.258 | 0.500 | 0.340 | 16 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 0 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 0 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 1 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.125 | 1.000 | 0.222 | 1 |
+| USAGE | 0.227 | 0.556 | 0.323 | 9 |
+| ACCESS | 0.250 | 0.400 | 0.308 | 5 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 2 |
+
+## Precision versus coverage
+
+| Coverage | Confidence ≥ | Typed precision | Retained recall |
+|---:|---:|---:|---:|
+| 10% | 0.942 | 0.750 | 0.176 |
+| 20% | 0.873 | 0.375 | 0.176 |
+| 29% | 0.781 | 0.333 | 0.235 |
+| 39% | 0.701 | 0.312 | 0.294 |
+| 49% | 0.638 | 0.350 | 0.412 |
+| 61% | 0.507 | 0.280 | 0.412 |
+| 71% | 0.473 | 0.241 | 0.412 |
+| 80% | 0.430 | 0.212 | 0.412 |
+| 90% | 0.380 | 0.189 | 0.412 |
+| 100% | 0.250 | 0.171 | 0.412 |
diff --git a/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed2_dev_agreement.md b/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed2_dev_agreement.md
new file mode 100644
index 0000000..c9329ad
--- /dev/null
+++ b/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed2_dev_agreement.md
@@ -0,0 +1,57 @@
+# Agreement with model drafts: deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed2
+
+- Gold: `annotations/batches/batch-03.jsonl`, `annotations/batches/batch-06.jsonl` (dev split of `splits/pool-v1.json`; origin: all; 172 documents)
+- Predictions: `reports/neural/predictions/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed2.jsonl` (deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed2)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 172 (155 with gold conditions, 17 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.130 | [0.103, 0.162] |
+| Exact span F1 | 0.152 | [0.125, 0.185] |
+| Exact span precision | 0.100 | [0.080, 0.124] |
+| Exact span recall | 0.319 | [0.271, 0.377] |
+| Role macro-F1 (roles with gold support) | 0.093 | [0.057, 0.138] |
+| Category macro-F1 | 0.121 | [0.089, 0.156] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.032 | [0.007, 0.062] |
+| Complete-document exact match, documents without conditions | 0.353 | [0.133, 0.588] |
+| False prerequisite rate (lower is better) | 0.577 | [0.532, 0.616] |
+| Reversed meaning rate (lower is better) | 0.026 | [0.012, 0.043] |
+| Category accuracy on exactly matched spans | 0.902 | [0.845, 0.958] |
+| Role accuracy on exactly matched spans | 0.943 | [0.897, 0.982] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.107 | 0.334 | 0.162 | 323 |
+| EXCEPTION | 0.061 | 0.118 | 0.080 | 17 |
+| NOT_REQUIRED | 0.072 | 0.278 | 0.115 | 18 |
+| UNCERTAIN | 0.008 | 0.036 | 0.014 | 28 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.089 | 0.250 | 0.131 | 36 |
+| USAGE | 0.084 | 0.306 | 0.132 | 186 |
+| ACCESS | 0.114 | 0.313 | 0.167 | 134 |
+| PLATFORM | 0.036 | 0.100 | 0.053 | 30 |
+
+## Precision versus coverage
+
+| Coverage | Confidence ≥ | Typed precision | Retained recall |
+|---:|---:|---:|---:|
+| 10% | 0.763 | 0.179 | 0.057 |
+| 20% | 0.665 | 0.159 | 0.101 |
+| 30% | 0.602 | 0.154 | 0.148 |
+| 40% | 0.565 | 0.146 | 0.187 |
+| 50% | 0.527 | 0.128 | 0.205 |
+| 60% | 0.498 | 0.114 | 0.218 |
+| 70% | 0.463 | 0.102 | 0.228 |
+| 80% | 0.419 | 0.095 | 0.244 |
+| 90% | 0.354 | 0.094 | 0.269 |
+| 100% | 0.167 | 0.085 | 0.272 |
diff --git a/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed2_dev_manual.md b/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed2_dev_manual.md
new file mode 100644
index 0000000..8fd00b9
--- /dev/null
+++ b/reports/neural/run-2/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed2_dev_manual.md
@@ -0,0 +1,57 @@
+# Hand-labelled dev: deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed2
+
+- Gold: `annotations/pilot/pilot-2.jsonl` (dev split of `splits/pool-v1.json`; origin: manual; 10 documents)
+- Predictions: `reports/neural/predictions/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed2.jsonl` (deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed2)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 10 (9 with gold conditions, 1 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.242 | [0.070, 0.435] |
+| Exact span F1 | 0.273 | [0.105, 0.471] |
+| Exact span precision | 0.184 | [0.069, 0.348] |
+| Exact span recall | 0.529 | [0.235, 0.818] |
+| Role macro-F1 (roles with gold support) | 0.138 | [0.042, 0.433] |
+| Category macro-F1 | 0.283 | [0.111, 0.607] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.111 | [0.000, 0.300] |
+| Complete-document exact match, documents without conditions | 0.000 | [0.000, 0.000] |
+| False prerequisite rate (lower is better) | 0.548 | [0.351, 0.735] |
+| Reversed meaning rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Category accuracy on exactly matched spans | 1.000 | [1.000, 1.000] |
+| Role accuracy on exactly matched spans | 0.889 | [0.500, 1.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.190 | 0.500 | 0.276 | 16 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 0 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 0 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 1 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.333 | 1.000 | 0.500 | 1 |
+| USAGE | 0.167 | 0.667 | 0.267 | 9 |
+| ACCESS | 0.333 | 0.400 | 0.364 | 5 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 2 |
+
+## Precision versus coverage
+
+| Coverage | Confidence ≥ | Typed precision | Retained recall |
+|---:|---:|---:|---:|
+| 10% | 0.797 | 0.600 | 0.176 |
+| 20% | 0.695 | 0.500 | 0.294 |
+| 31% | 0.605 | 0.400 | 0.353 |
+| 41% | 0.554 | 0.350 | 0.412 |
+| 49% | 0.524 | 0.333 | 0.471 |
+| 59% | 0.494 | 0.276 | 0.471 |
+| 69% | 0.461 | 0.235 | 0.471 |
+| 80% | 0.412 | 0.205 | 0.471 |
+| 90% | 0.366 | 0.182 | 0.471 |
+| 100% | 0.233 | 0.163 | 0.471 |
diff --git a/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed0_dev_agreement.md b/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed0_dev_agreement.md
new file mode 100644
index 0000000..ac6422f
--- /dev/null
+++ b/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed0_dev_agreement.md
@@ -0,0 +1,57 @@
+# Agreement with model drafts: distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed0
+
+- Gold: `annotations/batches/batch-03.jsonl`, `annotations/batches/batch-06.jsonl` (dev split of `splits/pool-v1.json`; origin: all; 172 documents)
+- Predictions: `reports/neural/predictions/distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed0.jsonl` (distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed0)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 172 (155 with gold conditions, 17 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.000 | [0.000, 0.000] |
+| Exact span F1 | 0.000 | [0.000, 0.000] |
+| Exact span precision | 0.000 | [0.000, 0.000] |
+| Exact span recall | 0.000 | [0.000, 0.000] |
+| Role macro-F1 (roles with gold support) | 0.000 | [0.000, 0.000] |
+| Category macro-F1 | 0.000 | [0.000, 0.000] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents without conditions | 1.000 | [1.000, 1.000] |
+| False prerequisite rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Reversed meaning rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Category accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+| Role accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.000 | 0.000 | 0.000 | 323 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 17 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 18 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 28 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.000 | 0.000 | 0.000 | 36 |
+| USAGE | 0.000 | 0.000 | 0.000 | 186 |
+| ACCESS | 0.000 | 0.000 | 0.000 | 134 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 30 |
+
+## Precision versus coverage
+
+| Coverage | Confidence ≥ | Typed precision | Retained recall |
+|---:|---:|---:|---:|
+| 100% | 0.137 | 0.000 | 0.000 |
+| 100% | 0.137 | 0.000 | 0.000 |
+| 100% | 0.137 | 0.000 | 0.000 |
+| 100% | 0.137 | 0.000 | 0.000 |
+| 100% | 0.137 | 0.000 | 0.000 |
+| 100% | 0.137 | 0.000 | 0.000 |
+| 100% | 0.137 | 0.000 | 0.000 |
+| 100% | 0.137 | 0.000 | 0.000 |
+| 100% | 0.137 | 0.000 | 0.000 |
+| 100% | 0.137 | 0.000 | 0.000 |
diff --git a/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed0_dev_manual.md b/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed0_dev_manual.md
new file mode 100644
index 0000000..d5c7c5c
--- /dev/null
+++ b/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed0_dev_manual.md
@@ -0,0 +1,42 @@
+# Hand-labelled dev: distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed0
+
+- Gold: `annotations/pilot/pilot-2.jsonl` (dev split of `splits/pool-v1.json`; origin: manual; 10 documents)
+- Predictions: `reports/neural/predictions/distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed0.jsonl` (distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed0)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 10 (9 with gold conditions, 1 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.000 | [0.000, 0.000] |
+| Exact span F1 | 0.000 | [0.000, 0.000] |
+| Exact span precision | 0.000 | [0.000, 0.000] |
+| Exact span recall | 0.000 | [0.000, 0.000] |
+| Role macro-F1 (roles with gold support) | 0.000 | [0.000, 0.000] |
+| Category macro-F1 | 0.000 | [0.000, 0.000] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents without conditions | 1.000 | [0.000, 1.000] |
+| False prerequisite rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Reversed meaning rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Category accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+| Role accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.000 | 0.000 | 0.000 | 16 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 0 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 0 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 1 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.000 | 0.000 | 0.000 | 1 |
+| USAGE | 0.000 | 0.000 | 0.000 | 9 |
+| ACCESS | 0.000 | 0.000 | 0.000 | 5 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 2 |
diff --git a/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed1_dev_agreement.md b/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed1_dev_agreement.md
new file mode 100644
index 0000000..f00e783
--- /dev/null
+++ b/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed1_dev_agreement.md
@@ -0,0 +1,42 @@
+# Agreement with model drafts: distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed1
+
+- Gold: `annotations/batches/batch-03.jsonl`, `annotations/batches/batch-06.jsonl` (dev split of `splits/pool-v1.json`; origin: all; 172 documents)
+- Predictions: `reports/neural/predictions/distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed1.jsonl` (distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed1)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 172 (155 with gold conditions, 17 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.000 | [0.000, 0.000] |
+| Exact span F1 | 0.000 | [0.000, 0.000] |
+| Exact span precision | 0.000 | [0.000, 0.000] |
+| Exact span recall | 0.000 | [0.000, 0.000] |
+| Role macro-F1 (roles with gold support) | 0.000 | [0.000, 0.000] |
+| Category macro-F1 | 0.000 | [0.000, 0.000] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents without conditions | 1.000 | [1.000, 1.000] |
+| False prerequisite rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Reversed meaning rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Category accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+| Role accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.000 | 0.000 | 0.000 | 323 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 17 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 18 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 28 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.000 | 0.000 | 0.000 | 36 |
+| USAGE | 0.000 | 0.000 | 0.000 | 186 |
+| ACCESS | 0.000 | 0.000 | 0.000 | 134 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 30 |
diff --git a/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed1_dev_manual.md b/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed1_dev_manual.md
new file mode 100644
index 0000000..8aef0b3
--- /dev/null
+++ b/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed1_dev_manual.md
@@ -0,0 +1,42 @@
+# Hand-labelled dev: distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed1
+
+- Gold: `annotations/pilot/pilot-2.jsonl` (dev split of `splits/pool-v1.json`; origin: manual; 10 documents)
+- Predictions: `reports/neural/predictions/distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed1.jsonl` (distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed1)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 10 (9 with gold conditions, 1 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.000 | [0.000, 0.000] |
+| Exact span F1 | 0.000 | [0.000, 0.000] |
+| Exact span precision | 0.000 | [0.000, 0.000] |
+| Exact span recall | 0.000 | [0.000, 0.000] |
+| Role macro-F1 (roles with gold support) | 0.000 | [0.000, 0.000] |
+| Category macro-F1 | 0.000 | [0.000, 0.000] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents without conditions | 1.000 | [0.000, 1.000] |
+| False prerequisite rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Reversed meaning rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Category accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+| Role accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.000 | 0.000 | 0.000 | 16 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 0 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 0 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 1 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.000 | 0.000 | 0.000 | 1 |
+| USAGE | 0.000 | 0.000 | 0.000 | 9 |
+| ACCESS | 0.000 | 0.000 | 0.000 | 5 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 2 |
diff --git a/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed2_dev_agreement.md b/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed2_dev_agreement.md
new file mode 100644
index 0000000..6ab7b29
--- /dev/null
+++ b/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed2_dev_agreement.md
@@ -0,0 +1,57 @@
+# Agreement with model drafts: distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed2
+
+- Gold: `annotations/batches/batch-03.jsonl`, `annotations/batches/batch-06.jsonl` (dev split of `splits/pool-v1.json`; origin: all; 172 documents)
+- Predictions: `reports/neural/predictions/distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed2.jsonl` (distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed2)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 172 (155 with gold conditions, 17 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.000 | [0.000, 0.000] |
+| Exact span F1 | 0.000 | [0.000, 0.000] |
+| Exact span precision | 0.000 | [0.000, 0.000] |
+| Exact span recall | 0.000 | [0.000, 0.000] |
+| Role macro-F1 (roles with gold support) | 0.000 | [0.000, 0.000] |
+| Category macro-F1 | 0.000 | [0.000, 0.000] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents without conditions | 1.000 | [1.000, 1.000] |
+| False prerequisite rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Reversed meaning rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Category accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+| Role accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.000 | 0.000 | 0.000 | 323 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 17 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 18 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 28 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.000 | 0.000 | 0.000 | 36 |
+| USAGE | 0.000 | 0.000 | 0.000 | 186 |
+| ACCESS | 0.000 | 0.000 | 0.000 | 134 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 30 |
+
+## Precision versus coverage
+
+| Coverage | Confidence ≥ | Typed precision | Retained recall |
+|---:|---:|---:|---:|
+| 100% | 0.138 | 0.000 | 0.000 |
+| 100% | 0.138 | 0.000 | 0.000 |
+| 100% | 0.138 | 0.000 | 0.000 |
+| 100% | 0.138 | 0.000 | 0.000 |
+| 100% | 0.138 | 0.000 | 0.000 |
+| 100% | 0.138 | 0.000 | 0.000 |
+| 100% | 0.138 | 0.000 | 0.000 |
+| 100% | 0.138 | 0.000 | 0.000 |
+| 100% | 0.138 | 0.000 | 0.000 |
+| 100% | 0.138 | 0.000 | 0.000 |
diff --git a/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed2_dev_manual.md b/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed2_dev_manual.md
new file mode 100644
index 0000000..2d25174
--- /dev/null
+++ b/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed2_dev_manual.md
@@ -0,0 +1,42 @@
+# Hand-labelled dev: distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed2
+
+- Gold: `annotations/pilot/pilot-2.jsonl` (dev split of `splits/pool-v1.json`; origin: manual; 10 documents)
+- Predictions: `reports/neural/predictions/distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed2.jsonl` (distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed2)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 10 (9 with gold conditions, 1 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.000 | [0.000, 0.000] |
+| Exact span F1 | 0.000 | [0.000, 0.000] |
+| Exact span precision | 0.000 | [0.000, 0.000] |
+| Exact span recall | 0.000 | [0.000, 0.000] |
+| Role macro-F1 (roles with gold support) | 0.000 | [0.000, 0.000] |
+| Category macro-F1 | 0.000 | [0.000, 0.000] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents without conditions | 1.000 | [0.000, 1.000] |
+| False prerequisite rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Reversed meaning rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Category accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+| Role accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.000 | 0.000 | 0.000 | 16 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 0 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 0 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 1 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.000 | 0.000 | 0.000 | 1 |
+| USAGE | 0.000 | 0.000 | 0.000 | 9 |
+| ACCESS | 0.000 | 0.000 | 0.000 | 5 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 2 |
diff --git a/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed0_dev_agreement.md b/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed0_dev_agreement.md
new file mode 100644
index 0000000..2c13252
--- /dev/null
+++ b/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed0_dev_agreement.md
@@ -0,0 +1,42 @@
+# Agreement with model drafts: distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed0
+
+- Gold: `annotations/batches/batch-03.jsonl`, `annotations/batches/batch-06.jsonl` (dev split of `splits/pool-v1.json`; origin: all; 172 documents)
+- Predictions: `reports/neural/predictions/distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed0.jsonl` (distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed0)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 172 (155 with gold conditions, 17 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.000 | [0.000, 0.000] |
+| Exact span F1 | 0.000 | [0.000, 0.000] |
+| Exact span precision | 0.000 | [0.000, 0.000] |
+| Exact span recall | 0.000 | [0.000, 0.000] |
+| Role macro-F1 (roles with gold support) | 0.000 | [0.000, 0.000] |
+| Category macro-F1 | 0.000 | [0.000, 0.000] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents without conditions | 1.000 | [1.000, 1.000] |
+| False prerequisite rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Reversed meaning rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Category accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+| Role accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.000 | 0.000 | 0.000 | 323 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 17 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 18 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 28 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.000 | 0.000 | 0.000 | 36 |
+| USAGE | 0.000 | 0.000 | 0.000 | 186 |
+| ACCESS | 0.000 | 0.000 | 0.000 | 134 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 30 |
diff --git a/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed0_dev_manual.md b/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed0_dev_manual.md
new file mode 100644
index 0000000..e0e5740
--- /dev/null
+++ b/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed0_dev_manual.md
@@ -0,0 +1,42 @@
+# Hand-labelled dev: distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed0
+
+- Gold: `annotations/pilot/pilot-2.jsonl` (dev split of `splits/pool-v1.json`; origin: manual; 10 documents)
+- Predictions: `reports/neural/predictions/distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed0.jsonl` (distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed0)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 10 (9 with gold conditions, 1 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.000 | [0.000, 0.000] |
+| Exact span F1 | 0.000 | [0.000, 0.000] |
+| Exact span precision | 0.000 | [0.000, 0.000] |
+| Exact span recall | 0.000 | [0.000, 0.000] |
+| Role macro-F1 (roles with gold support) | 0.000 | [0.000, 0.000] |
+| Category macro-F1 | 0.000 | [0.000, 0.000] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents without conditions | 1.000 | [0.000, 1.000] |
+| False prerequisite rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Reversed meaning rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Category accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+| Role accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.000 | 0.000 | 0.000 | 16 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 0 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 0 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 1 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.000 | 0.000 | 0.000 | 1 |
+| USAGE | 0.000 | 0.000 | 0.000 | 9 |
+| ACCESS | 0.000 | 0.000 | 0.000 | 5 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 2 |
diff --git a/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed1_dev_agreement.md b/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed1_dev_agreement.md
new file mode 100644
index 0000000..89b3a6e
--- /dev/null
+++ b/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed1_dev_agreement.md
@@ -0,0 +1,57 @@
+# Agreement with model drafts: distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed1
+
+- Gold: `annotations/batches/batch-03.jsonl`, `annotations/batches/batch-06.jsonl` (dev split of `splits/pool-v1.json`; origin: all; 172 documents)
+- Predictions: `reports/neural/predictions/distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed1.jsonl` (distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed1)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 172 (155 with gold conditions, 17 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.064 | [0.048, 0.081] |
+| Exact span F1 | 0.086 | [0.064, 0.105] |
+| Exact span precision | 0.073 | [0.056, 0.091] |
+| Exact span recall | 0.104 | [0.072, 0.134] |
+| Role macro-F1 (roles with gold support) | 0.042 | [0.020, 0.079] |
+| Category macro-F1 | 0.046 | [0.034, 0.056] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.006 | [0.000, 0.020] |
+| Complete-document exact match, documents without conditions | 0.824 | [0.615, 1.000] |
+| False prerequisite rate (lower is better) | 0.510 | [0.429, 0.573] |
+| Reversed meaning rate (lower is better) | 0.042 | [0.013, 0.075] |
+| Category accuracy on exactly matched spans | 0.875 | [0.750, 0.976] |
+| Role accuracy on exactly matched spans | 0.850 | [0.746, 0.971] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.066 | 0.099 | 0.079 | 323 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 17 |
+| NOT_REQUIRED | 0.077 | 0.111 | 0.091 | 18 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 28 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.000 | 0.000 | 0.000 | 36 |
+| USAGE | 0.054 | 0.097 | 0.069 | 186 |
+| ACCESS | 0.104 | 0.127 | 0.114 | 134 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 30 |
+
+## Precision versus coverage
+
+| Coverage | Confidence ≥ | Typed precision | Retained recall |
+|---:|---:|---:|---:|
+| 10% | 0.696 | 0.164 | 0.023 |
+| 20% | 0.630 | 0.118 | 0.034 |
+| 30% | 0.589 | 0.098 | 0.041 |
+| 40% | 0.553 | 0.087 | 0.049 |
+| 50% | 0.522 | 0.073 | 0.052 |
+| 60% | 0.505 | 0.061 | 0.052 |
+| 70% | 0.490 | 0.057 | 0.057 |
+| 80% | 0.461 | 0.050 | 0.057 |
+| 90% | 0.402 | 0.055 | 0.070 |
+| 100% | 0.220 | 0.055 | 0.078 |
diff --git a/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed1_dev_manual.md b/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed1_dev_manual.md
new file mode 100644
index 0000000..8116f1f
--- /dev/null
+++ b/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed1_dev_manual.md
@@ -0,0 +1,57 @@
+# Hand-labelled dev: distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed1
+
+- Gold: `annotations/pilot/pilot-2.jsonl` (dev split of `splits/pool-v1.json`; origin: manual; 10 documents)
+- Predictions: `reports/neural/predictions/distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed1.jsonl` (distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed1)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 10 (9 with gold conditions, 1 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.146 | [0.000, 0.303] |
+| Exact span F1 | 0.146 | [0.000, 0.303] |
+| Exact span precision | 0.125 | [0.000, 0.250] |
+| Exact span recall | 0.176 | [0.000, 0.429] |
+| Role macro-F1 (roles with gold support) | 0.079 | [0.000, 0.276] |
+| Category macro-F1 | 0.101 | [0.000, 0.317] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.111 | [0.000, 0.300] |
+| Complete-document exact match, documents without conditions | 1.000 | [0.000, 1.000] |
+| False prerequisite rate (lower is better) | 0.409 | [0.263, 0.600] |
+| Reversed meaning rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Category accuracy on exactly matched spans | 1.000 | [0.000, 1.000] |
+| Role accuracy on exactly matched spans | 1.000 | [0.000, 1.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.136 | 0.188 | 0.158 | 16 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 0 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 0 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 1 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.000 | 0.000 | 0.000 | 1 |
+| USAGE | 0.118 | 0.222 | 0.154 | 9 |
+| ACCESS | 0.333 | 0.200 | 0.250 | 5 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 2 |
+
+## Precision versus coverage
+
+| Coverage | Confidence ≥ | Typed precision | Retained recall |
+|---:|---:|---:|---:|
+| 8% | 0.707 | 0.500 | 0.059 |
+| 21% | 0.579 | 0.200 | 0.059 |
+| 29% | 0.537 | 0.143 | 0.059 |
+| 42% | 0.507 | 0.100 | 0.059 |
+| 50% | 0.499 | 0.167 | 0.118 |
+| 58% | 0.483 | 0.214 | 0.176 |
+| 71% | 0.416 | 0.176 | 0.176 |
+| 79% | 0.404 | 0.158 | 0.176 |
+| 92% | 0.336 | 0.136 | 0.176 |
+| 100% | 0.278 | 0.125 | 0.176 |
diff --git a/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed2_dev_agreement.md b/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed2_dev_agreement.md
new file mode 100644
index 0000000..06a2dcd
--- /dev/null
+++ b/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed2_dev_agreement.md
@@ -0,0 +1,42 @@
+# Agreement with model drafts: distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed2
+
+- Gold: `annotations/batches/batch-03.jsonl`, `annotations/batches/batch-06.jsonl` (dev split of `splits/pool-v1.json`; origin: all; 172 documents)
+- Predictions: `reports/neural/predictions/distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed2.jsonl` (distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed2)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 172 (155 with gold conditions, 17 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.000 | [0.000, 0.000] |
+| Exact span F1 | 0.000 | [0.000, 0.000] |
+| Exact span precision | 0.000 | [0.000, 0.000] |
+| Exact span recall | 0.000 | [0.000, 0.000] |
+| Role macro-F1 (roles with gold support) | 0.000 | [0.000, 0.000] |
+| Category macro-F1 | 0.000 | [0.000, 0.000] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents without conditions | 1.000 | [1.000, 1.000] |
+| False prerequisite rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Reversed meaning rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Category accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+| Role accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.000 | 0.000 | 0.000 | 323 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 17 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 18 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 28 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.000 | 0.000 | 0.000 | 36 |
+| USAGE | 0.000 | 0.000 | 0.000 | 186 |
+| ACCESS | 0.000 | 0.000 | 0.000 | 134 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 30 |
diff --git a/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed2_dev_manual.md b/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed2_dev_manual.md
new file mode 100644
index 0000000..f24407d
--- /dev/null
+++ b/reports/neural/run-2/distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed2_dev_manual.md
@@ -0,0 +1,42 @@
+# Hand-labelled dev: distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed2
+
+- Gold: `annotations/pilot/pilot-2.jsonl` (dev split of `splits/pool-v1.json`; origin: manual; 10 documents)
+- Predictions: `reports/neural/predictions/distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed2.jsonl` (distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed2)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 10 (9 with gold conditions, 1 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.000 | [0.000, 0.000] |
+| Exact span F1 | 0.000 | [0.000, 0.000] |
+| Exact span precision | 0.000 | [0.000, 0.000] |
+| Exact span recall | 0.000 | [0.000, 0.000] |
+| Role macro-F1 (roles with gold support) | 0.000 | [0.000, 0.000] |
+| Category macro-F1 | 0.000 | [0.000, 0.000] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents without conditions | 1.000 | [0.000, 1.000] |
+| False prerequisite rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Reversed meaning rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Category accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+| Role accuracy on exactly matched spans | 0.000 | [0.000, 0.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.000 | 0.000 | 0.000 | 16 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 0 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 0 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 1 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.000 | 0.000 | 0.000 | 1 |
+| USAGE | 0.000 | 0.000 | 0.000 | 9 |
+| ACCESS | 0.000 | 0.000 | 0.000 | 5 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 2 |
diff --git a/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed0_dev_agreement.md b/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed0_dev_agreement.md
new file mode 100644
index 0000000..436568e
--- /dev/null
+++ b/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed0_dev_agreement.md
@@ -0,0 +1,57 @@
+# Agreement with model drafts: distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed0
+
+- Gold: `annotations/batches/batch-03.jsonl`, `annotations/batches/batch-06.jsonl` (dev split of `splits/pool-v1.json`; origin: all; 172 documents)
+- Predictions: `reports/neural/predictions/distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed0.jsonl` (distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed0)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 172 (155 with gold conditions, 17 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.039 | [0.029, 0.052] |
+| Exact span F1 | 0.056 | [0.043, 0.073] |
+| Exact span precision | 0.034 | [0.026, 0.045] |
+| Exact span recall | 0.168 | [0.131, 0.210] |
+| Role macro-F1 (roles with gold support) | 0.037 | [0.017, 0.057] |
+| Category macro-F1 | 0.042 | [0.027, 0.058] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.006 | [0.000, 0.023] |
+| Complete-document exact match, documents without conditions | 0.176 | [0.000, 0.417] |
+| False prerequisite rate (lower is better) | 0.724 | [0.685, 0.755] |
+| Reversed meaning rate (lower is better) | 0.039 | [0.013, 0.069] |
+| Category accuracy on exactly matched spans | 0.800 | [0.689, 0.898] |
+| Role accuracy on exactly matched spans | 0.862 | [0.769, 0.952] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.031 | 0.158 | 0.052 | 323 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 17 |
+| NOT_REQUIRED | 0.050 | 0.167 | 0.077 | 18 |
+| UNCERTAIN | 0.010 | 0.071 | 0.018 | 28 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.027 | 0.083 | 0.041 | 36 |
+| USAGE | 0.022 | 0.134 | 0.038 | 186 |
+| ACCESS | 0.042 | 0.164 | 0.067 | 134 |
+| PLATFORM | 0.013 | 0.067 | 0.021 | 30 |
+
+## Precision versus coverage
+
+| Coverage | Confidence ≥ | Typed precision | Retained recall |
+|---:|---:|---:|---:|
+| 10% | 0.472 | 0.052 | 0.026 |
+| 20% | 0.437 | 0.034 | 0.034 |
+| 30% | 0.413 | 0.034 | 0.052 |
+| 40% | 0.389 | 0.035 | 0.070 |
+| 50% | 0.363 | 0.035 | 0.088 |
+| 60% | 0.337 | 0.030 | 0.091 |
+| 70% | 0.305 | 0.028 | 0.098 |
+| 80% | 0.274 | 0.026 | 0.106 |
+| 90% | 0.233 | 0.025 | 0.111 |
+| 100% | 0.135 | 0.023 | 0.117 |
diff --git a/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed0_dev_manual.md b/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed0_dev_manual.md
new file mode 100644
index 0000000..f1cc973
--- /dev/null
+++ b/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed0_dev_manual.md
@@ -0,0 +1,57 @@
+# Hand-labelled dev: distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed0
+
+- Gold: `annotations/pilot/pilot-2.jsonl` (dev split of `splits/pool-v1.json`; origin: manual; 10 documents)
+- Predictions: `reports/neural/predictions/distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed0.jsonl` (distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed0)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 10 (9 with gold conditions, 1 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.107 | [0.041, 0.181] |
+| Exact span F1 | 0.107 | [0.041, 0.181] |
+| Exact span precision | 0.063 | [0.024, 0.109] |
+| Exact span recall | 0.353 | [0.125, 0.611] |
+| Role macro-F1 (roles with gold support) | 0.061 | [0.023, 0.184] |
+| Category macro-F1 | 0.094 | [0.052, 0.230] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents without conditions | 0.000 | [0.000, 0.000] |
+| False prerequisite rate (lower is better) | 0.756 | [0.677, 0.831] |
+| Reversed meaning rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Category accuracy on exactly matched spans | 1.000 | [1.000, 1.000] |
+| Role accuracy on exactly matched spans | 1.000 | [1.000, 1.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.073 | 0.375 | 0.122 | 16 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 0 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 0 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 1 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.000 | 0.000 | 0.000 | 1 |
+| USAGE | 0.032 | 0.222 | 0.056 | 9 |
+| ACCESS | 0.200 | 0.800 | 0.320 | 5 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 2 |
+
+## Precision versus coverage
+
+| Coverage | Confidence ≥ | Typed precision | Retained recall |
+|---:|---:|---:|---:|
+| 11% | 0.487 | 0.000 | 0.000 |
+| 20% | 0.447 | 0.105 | 0.118 |
+| 29% | 0.424 | 0.071 | 0.118 |
+| 40% | 0.380 | 0.079 | 0.176 |
+| 51% | 0.352 | 0.083 | 0.235 |
+| 60% | 0.335 | 0.088 | 0.294 |
+| 69% | 0.314 | 0.076 | 0.294 |
+| 80% | 0.268 | 0.079 | 0.353 |
+| 91% | 0.234 | 0.070 | 0.353 |
+| 100% | 0.159 | 0.063 | 0.353 |
diff --git a/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed1_dev_agreement.md b/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed1_dev_agreement.md
new file mode 100644
index 0000000..6dade19
--- /dev/null
+++ b/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed1_dev_agreement.md
@@ -0,0 +1,57 @@
+# Agreement with model drafts: distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed1
+
+- Gold: `annotations/batches/batch-03.jsonl`, `annotations/batches/batch-06.jsonl` (dev split of `splits/pool-v1.json`; origin: all; 172 documents)
+- Predictions: `reports/neural/predictions/distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed1.jsonl` (distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed1)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 172 (155 with gold conditions, 17 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.042 | [0.029, 0.054] |
+| Exact span F1 | 0.058 | [0.042, 0.072] |
+| Exact span precision | 0.037 | [0.027, 0.046] |
+| Exact span recall | 0.137 | [0.098, 0.174] |
+| Role macro-F1 (roles with gold support) | 0.040 | [0.020, 0.067] |
+| Category macro-F1 | 0.038 | [0.026, 0.050] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.013 | [0.000, 0.034] |
+| Complete-document exact match, documents without conditions | 0.471 | [0.231, 0.727] |
+| False prerequisite rate (lower is better) | 0.662 | [0.624, 0.694] |
+| Reversed meaning rate (lower is better) | 0.053 | [0.025, 0.087] |
+| Category accuracy on exactly matched spans | 0.887 | [0.804, 0.966] |
+| Role accuracy on exactly matched spans | 0.830 | [0.702, 0.964] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.033 | 0.118 | 0.051 | 323 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 17 |
+| NOT_REQUIRED | 0.064 | 0.333 | 0.107 | 18 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 28 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.017 | 0.056 | 0.026 | 36 |
+| USAGE | 0.028 | 0.118 | 0.045 | 186 |
+| ACCESS | 0.051 | 0.172 | 0.079 | 134 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 30 |
+
+## Precision versus coverage
+
+| Coverage | Confidence ≥ | Typed precision | Retained recall |
+|---:|---:|---:|---:|
+| 10% | 0.510 | 0.021 | 0.008 |
+| 20% | 0.474 | 0.024 | 0.018 |
+| 30% | 0.449 | 0.028 | 0.031 |
+| 40% | 0.425 | 0.033 | 0.049 |
+| 50% | 0.396 | 0.032 | 0.060 |
+| 60% | 0.369 | 0.035 | 0.078 |
+| 70% | 0.337 | 0.035 | 0.091 |
+| 80% | 0.293 | 0.031 | 0.093 |
+| 90% | 0.246 | 0.029 | 0.098 |
+| 100% | 0.126 | 0.026 | 0.098 |
diff --git a/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed1_dev_manual.md b/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed1_dev_manual.md
new file mode 100644
index 0000000..5f0940f
--- /dev/null
+++ b/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed1_dev_manual.md
@@ -0,0 +1,57 @@
+# Hand-labelled dev: distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed1
+
+- Gold: `annotations/pilot/pilot-2.jsonl` (dev split of `splits/pool-v1.json`; origin: manual; 10 documents)
+- Predictions: `reports/neural/predictions/distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed1.jsonl` (distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed1)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 10 (9 with gold conditions, 1 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.084 | [0.019, 0.161] |
+| Exact span F1 | 0.084 | [0.019, 0.161] |
+| Exact span precision | 0.051 | [0.012, 0.100] |
+| Exact span recall | 0.235 | [0.043, 0.500] |
+| Role macro-F1 (roles with gold support) | 0.051 | [0.011, 0.169] |
+| Category macro-F1 | 0.057 | [0.014, 0.170] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents without conditions | 0.000 | [0.000, 0.000] |
+| False prerequisite rate (lower is better) | 0.714 | [0.544, 0.864] |
+| Reversed meaning rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Category accuracy on exactly matched spans | 1.000 | [1.000, 1.000] |
+| Role accuracy on exactly matched spans | 1.000 | [1.000, 1.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.063 | 0.250 | 0.101 | 16 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 0 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 0 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 1 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.000 | 0.000 | 0.000 | 1 |
+| USAGE | 0.043 | 0.222 | 0.073 | 9 |
+| ACCESS | 0.095 | 0.400 | 0.154 | 5 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 2 |
+
+## Precision versus coverage
+
+| Coverage | Confidence ≥ | Typed precision | Retained recall |
+|---:|---:|---:|---:|
+| 10% | 0.500 | 0.125 | 0.059 |
+| 21% | 0.470 | 0.062 | 0.059 |
+| 29% | 0.448 | 0.087 | 0.118 |
+| 40% | 0.414 | 0.097 | 0.176 |
+| 50% | 0.400 | 0.077 | 0.176 |
+| 60% | 0.358 | 0.085 | 0.235 |
+| 71% | 0.337 | 0.073 | 0.235 |
+| 79% | 0.293 | 0.065 | 0.235 |
+| 90% | 0.255 | 0.057 | 0.235 |
+| 100% | 0.169 | 0.051 | 0.235 |
diff --git a/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed2_dev_agreement.md b/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed2_dev_agreement.md
new file mode 100644
index 0000000..86272fd
--- /dev/null
+++ b/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed2_dev_agreement.md
@@ -0,0 +1,57 @@
+# Agreement with model drafts: distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed2
+
+- Gold: `annotations/batches/batch-03.jsonl`, `annotations/batches/batch-06.jsonl` (dev split of `splits/pool-v1.json`; origin: all; 172 documents)
+- Predictions: `reports/neural/predictions/distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed2.jsonl` (distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed2)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 172 (155 with gold conditions, 17 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.033 | [0.022, 0.045] |
+| Exact span F1 | 0.044 | [0.031, 0.059] |
+| Exact span precision | 0.027 | [0.019, 0.037] |
+| Exact span recall | 0.111 | [0.078, 0.144] |
+| Role macro-F1 (roles with gold support) | 0.025 | [0.011, 0.043] |
+| Category macro-F1 | 0.026 | [0.018, 0.034] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents without conditions | 0.412 | [0.200, 0.667] |
+| False prerequisite rate (lower is better) | 0.667 | [0.628, 0.701] |
+| Reversed meaning rate (lower is better) | 0.038 | [0.014, 0.063] |
+| Category accuracy on exactly matched spans | 0.814 | [0.703, 0.929] |
+| Role accuracy on exactly matched spans | 0.930 | [0.833, 1.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.032 | 0.118 | 0.050 | 323 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 17 |
+| NOT_REQUIRED | 0.032 | 0.111 | 0.049 | 18 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 28 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.007 | 0.028 | 0.012 | 36 |
+| USAGE | 0.018 | 0.086 | 0.030 | 186 |
+| ACCESS | 0.041 | 0.134 | 0.063 | 134 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 30 |
+
+## Precision versus coverage
+
+| Coverage | Confidence ≥ | Typed precision | Retained recall |
+|---:|---:|---:|---:|
+| 10% | 0.521 | 0.026 | 0.010 |
+| 20% | 0.480 | 0.029 | 0.023 |
+| 30% | 0.449 | 0.028 | 0.034 |
+| 40% | 0.424 | 0.027 | 0.044 |
+| 50% | 0.397 | 0.023 | 0.047 |
+| 60% | 0.371 | 0.021 | 0.052 |
+| 70% | 0.340 | 0.022 | 0.062 |
+| 80% | 0.304 | 0.022 | 0.070 |
+| 90% | 0.257 | 0.022 | 0.080 |
+| 100% | 0.122 | 0.020 | 0.083 |
diff --git a/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed2_dev_manual.md b/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed2_dev_manual.md
new file mode 100644
index 0000000..40aa9a7
--- /dev/null
+++ b/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed2_dev_manual.md
@@ -0,0 +1,57 @@
+# Hand-labelled dev: distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed2
+
+- Gold: `annotations/pilot/pilot-2.jsonl` (dev split of `splits/pool-v1.json`; origin: manual; 10 documents)
+- Predictions: `reports/neural/predictions/distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed2.jsonl` (distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed2)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 10 (9 with gold conditions, 1 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.082 | [0.016, 0.174] |
+| Exact span F1 | 0.082 | [0.016, 0.174] |
+| Exact span precision | 0.050 | [0.009, 0.111] |
+| Exact span recall | 0.235 | [0.043, 0.500] |
+| Role macro-F1 (roles with gold support) | 0.052 | [0.011, 0.185] |
+| Category macro-F1 | 0.062 | [0.014, 0.164] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents without conditions | 0.000 | [0.000, 0.000] |
+| False prerequisite rate (lower is better) | 0.721 | [0.556, 0.877] |
+| Reversed meaning rate (lower is better) | 0.130 | [0.000, 0.310] |
+| Category accuracy on exactly matched spans | 1.000 | [1.000, 1.000] |
+| Role accuracy on exactly matched spans | 1.000 | [1.000, 1.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.066 | 0.250 | 0.104 | 16 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 0 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 0 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 1 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.000 | 0.000 | 0.000 | 1 |
+| USAGE | 0.049 | 0.222 | 0.080 | 9 |
+| ACCESS | 0.105 | 0.400 | 0.167 | 5 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 2 |
+
+## Precision versus coverage
+
+| Coverage | Confidence ≥ | Typed precision | Retained recall |
+|---:|---:|---:|---:|
+| 10% | 0.520 | 0.125 | 0.059 |
+| 20% | 0.478 | 0.188 | 0.176 |
+| 30% | 0.457 | 0.125 | 0.176 |
+| 40% | 0.433 | 0.094 | 0.176 |
+| 50% | 0.391 | 0.100 | 0.235 |
+| 60% | 0.354 | 0.083 | 0.235 |
+| 70% | 0.335 | 0.071 | 0.235 |
+| 80% | 0.291 | 0.062 | 0.235 |
+| 90% | 0.265 | 0.056 | 0.235 |
+| 100% | 0.200 | 0.050 | 0.235 |
diff --git a/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed0_dev_agreement.md b/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed0_dev_agreement.md
new file mode 100644
index 0000000..dad8f39
--- /dev/null
+++ b/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed0_dev_agreement.md
@@ -0,0 +1,57 @@
+# Agreement with model drafts: distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed0
+
+- Gold: `annotations/batches/batch-03.jsonl`, `annotations/batches/batch-06.jsonl` (dev split of `splits/pool-v1.json`; origin: all; 172 documents)
+- Predictions: `reports/neural/predictions/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed0.jsonl` (distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed0)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 172 (155 with gold conditions, 17 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.074 | [0.051, 0.099] |
+| Exact span F1 | 0.101 | [0.079, 0.129] |
+| Exact span precision | 0.069 | [0.053, 0.092] |
+| Exact span recall | 0.184 | [0.148, 0.225] |
+| Role macro-F1 (roles with gold support) | 0.047 | [0.028, 0.067] |
+| Category macro-F1 | 0.071 | [0.054, 0.092] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.019 | [0.000, 0.045] |
+| Complete-document exact match, documents without conditions | 0.706 | [0.500, 0.909] |
+| False prerequisite rate (lower is better) | 0.554 | [0.492, 0.606] |
+| Reversed meaning rate (lower is better) | 0.044 | [0.018, 0.072] |
+| Category accuracy on exactly matched spans | 0.845 | [0.757, 0.926] |
+| Role accuracy on exactly matched spans | 0.859 | [0.736, 0.952] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.069 | 0.176 | 0.099 | 323 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 17 |
+| NOT_REQUIRED | 0.047 | 0.167 | 0.073 | 18 |
+| UNCERTAIN | 0.009 | 0.036 | 0.014 | 28 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.042 | 0.111 | 0.061 | 36 |
+| USAGE | 0.050 | 0.161 | 0.076 | 186 |
+| ACCESS | 0.094 | 0.187 | 0.125 | 134 |
+| PLATFORM | 0.017 | 0.033 | 0.022 | 30 |
+
+## Precision versus coverage
+
+| Coverage | Confidence ≥ | Typed precision | Retained recall |
+|---:|---:|---:|---:|
+| 10% | 0.806 | 0.157 | 0.041 |
+| 20% | 0.712 | 0.127 | 0.067 |
+| 30% | 0.649 | 0.101 | 0.080 |
+| 40% | 0.602 | 0.088 | 0.093 |
+| 50% | 0.558 | 0.076 | 0.101 |
+| 60% | 0.527 | 0.070 | 0.111 |
+| 70% | 0.500 | 0.064 | 0.119 |
+| 80% | 0.457 | 0.061 | 0.130 |
+| 90% | 0.384 | 0.056 | 0.135 |
+| 100% | 0.185 | 0.051 | 0.135 |
diff --git a/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed0_dev_manual.md b/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed0_dev_manual.md
new file mode 100644
index 0000000..cd89e34
--- /dev/null
+++ b/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed0_dev_manual.md
@@ -0,0 +1,57 @@
+# Hand-labelled dev: distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed0
+
+- Gold: `annotations/pilot/pilot-2.jsonl` (dev split of `splits/pool-v1.json`; origin: manual; 10 documents)
+- Predictions: `reports/neural/predictions/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed0.jsonl` (distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed0)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 10 (9 with gold conditions, 1 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.230 | [0.048, 0.400] |
+| Exact span F1 | 0.230 | [0.048, 0.400] |
+| Exact span precision | 0.159 | [0.037, 0.297] |
+| Exact span recall | 0.412 | [0.077, 0.750] |
+| Role macro-F1 (roles with gold support) | 0.137 | [0.037, 0.405] |
+| Category macro-F1 | 0.186 | [0.067, 0.349] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents without conditions | 1.000 | [0.000, 1.000] |
+| False prerequisite rate (lower is better) | 0.543 | [0.200, 0.778] |
+| Reversed meaning rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Category accuracy on exactly matched spans | 1.000 | [1.000, 1.000] |
+| Role accuracy on exactly matched spans | 1.000 | [1.000, 1.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.200 | 0.438 | 0.275 | 16 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 0 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 0 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 1 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.000 | 0.000 | 0.000 | 1 |
+| USAGE | 0.129 | 0.444 | 0.200 | 9 |
+| ACCESS | 0.500 | 0.600 | 0.545 | 5 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 2 |
+
+## Precision versus coverage
+
+| Coverage | Confidence ≥ | Typed precision | Retained recall |
+|---:|---:|---:|---:|
+| 9% | 0.839 | 0.750 | 0.176 |
+| 20% | 0.796 | 0.333 | 0.176 |
+| 30% | 0.701 | 0.385 | 0.294 |
+| 41% | 0.611 | 0.278 | 0.294 |
+| 50% | 0.593 | 0.227 | 0.294 |
+| 59% | 0.532 | 0.231 | 0.353 |
+| 70% | 0.507 | 0.194 | 0.353 |
+| 80% | 0.471 | 0.200 | 0.412 |
+| 91% | 0.361 | 0.175 | 0.412 |
+| 100% | 0.254 | 0.159 | 0.412 |
diff --git a/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed1_dev_agreement.md b/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed1_dev_agreement.md
new file mode 100644
index 0000000..12d448d
--- /dev/null
+++ b/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed1_dev_agreement.md
@@ -0,0 +1,57 @@
+# Agreement with model drafts: distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed1
+
+- Gold: `annotations/batches/batch-03.jsonl`, `annotations/batches/batch-06.jsonl` (dev split of `splits/pool-v1.json`; origin: all; 172 documents)
+- Predictions: `reports/neural/predictions/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed1.jsonl` (distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed1)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 172 (155 with gold conditions, 17 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.041 | [0.030, 0.055] |
+| Exact span F1 | 0.052 | [0.040, 0.065] |
+| Exact span precision | 0.030 | [0.023, 0.038] |
+| Exact span recall | 0.194 | [0.153, 0.236] |
+| Role macro-F1 (roles with gold support) | 0.035 | [0.017, 0.057] |
+| Category macro-F1 | 0.039 | [0.029, 0.049] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents without conditions | 0.059 | [0.000, 0.200] |
+| False prerequisite rate (lower is better) | 0.770 | [0.743, 0.793] |
+| Reversed meaning rate (lower is better) | 0.052 | [0.023, 0.084] |
+| Category accuracy on exactly matched spans | 0.867 | [0.770, 0.948] |
+| Role accuracy on exactly matched spans | 0.933 | [0.840, 1.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.030 | 0.201 | 0.052 | 323 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 17 |
+| NOT_REQUIRED | 0.052 | 0.278 | 0.088 | 18 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 28 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.007 | 0.056 | 0.013 | 36 |
+| USAGE | 0.021 | 0.151 | 0.037 | 186 |
+| ACCESS | 0.062 | 0.254 | 0.099 | 134 |
+| PLATFORM | 0.003 | 0.033 | 0.005 | 30 |
+
+## Precision versus coverage
+
+| Coverage | Confidence ≥ | Typed precision | Retained recall |
+|---:|---:|---:|---:|
+| 10% | 0.473 | 0.056 | 0.036 |
+| 20% | 0.435 | 0.051 | 0.067 |
+| 30% | 0.406 | 0.042 | 0.083 |
+| 40% | 0.382 | 0.043 | 0.111 |
+| 50% | 0.357 | 0.037 | 0.122 |
+| 60% | 0.332 | 0.034 | 0.135 |
+| 70% | 0.302 | 0.030 | 0.137 |
+| 80% | 0.270 | 0.027 | 0.142 |
+| 90% | 0.229 | 0.026 | 0.153 |
+| 100% | 0.122 | 0.024 | 0.155 |
diff --git a/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed1_dev_manual.md b/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed1_dev_manual.md
new file mode 100644
index 0000000..8af54f7
--- /dev/null
+++ b/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed1_dev_manual.md
@@ -0,0 +1,57 @@
+# Hand-labelled dev: distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed1
+
+- Gold: `annotations/pilot/pilot-2.jsonl` (dev split of `splits/pool-v1.json`; origin: manual; 10 documents)
+- Predictions: `reports/neural/predictions/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed1.jsonl` (distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed1)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 10 (9 with gold conditions, 1 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.052 | [0.012, 0.094] |
+| Exact span F1 | 0.052 | [0.012, 0.094] |
+| Exact span precision | 0.029 | [0.007, 0.053] |
+| Exact span recall | 0.235 | [0.043, 0.500] |
+| Role macro-F1 (roles with gold support) | 0.030 | [0.007, 0.098] |
+| Category macro-F1 | 0.035 | [0.010, 0.083] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents without conditions | 0.000 | [0.000, 0.000] |
+| False prerequisite rate (lower is better) | 0.765 | [0.653, 0.841] |
+| Reversed meaning rate (lower is better) | 0.000 | [0.000, 0.000] |
+| Category accuracy on exactly matched spans | 1.000 | [1.000, 1.000] |
+| Role accuracy on exactly matched spans | 1.000 | [1.000, 1.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.034 | 0.250 | 0.059 | 16 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 0 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 0 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 1 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.000 | 0.000 | 0.000 | 1 |
+| USAGE | 0.028 | 0.222 | 0.050 | 9 |
+| ACCESS | 0.050 | 0.400 | 0.089 | 5 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 2 |
+
+## Precision versus coverage
+
+| Coverage | Confidence ≥ | Typed precision | Retained recall |
+|---:|---:|---:|---:|
+| 10% | 0.466 | 0.143 | 0.118 |
+| 20% | 0.430 | 0.111 | 0.176 |
+| 30% | 0.408 | 0.073 | 0.176 |
+| 40% | 0.376 | 0.073 | 0.235 |
+| 50% | 0.358 | 0.059 | 0.235 |
+| 60% | 0.321 | 0.049 | 0.235 |
+| 70% | 0.293 | 0.042 | 0.235 |
+| 80% | 0.278 | 0.036 | 0.235 |
+| 90% | 0.245 | 0.033 | 0.235 |
+| 100% | 0.157 | 0.029 | 0.235 |
diff --git a/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed2_dev_agreement.md b/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed2_dev_agreement.md
new file mode 100644
index 0000000..fb55c5a
--- /dev/null
+++ b/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed2_dev_agreement.md
@@ -0,0 +1,57 @@
+# Agreement with model drafts: distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed2
+
+- Gold: `annotations/batches/batch-03.jsonl`, `annotations/batches/batch-06.jsonl` (dev split of `splits/pool-v1.json`; origin: all; 172 documents)
+- Predictions: `reports/neural/predictions/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed2.jsonl` (distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed2)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 172 (155 with gold conditions, 17 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.075 | [0.051, 0.105] |
+| Exact span F1 | 0.101 | [0.077, 0.131] |
+| Exact span precision | 0.072 | [0.054, 0.096] |
+| Exact span recall | 0.171 | [0.131, 0.215] |
+| Role macro-F1 (roles with gold support) | 0.060 | [0.035, 0.092] |
+| Category macro-F1 | 0.066 | [0.046, 0.090] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.013 | [0.000, 0.034] |
+| Complete-document exact match, documents without conditions | 0.882 | [0.700, 1.000] |
+| False prerequisite rate (lower is better) | 0.541 | [0.478, 0.601] |
+| Reversed meaning rate (lower is better) | 0.046 | [0.022, 0.074] |
+| Category accuracy on exactly matched spans | 0.848 | [0.759, 0.927] |
+| Role accuracy on exactly matched spans | 0.879 | [0.756, 0.983] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.074 | 0.158 | 0.101 | 323 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 17 |
+| NOT_REQUIRED | 0.070 | 0.222 | 0.107 | 18 |
+| UNCERTAIN | 0.019 | 0.107 | 0.032 | 28 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.019 | 0.056 | 0.028 | 36 |
+| USAGE | 0.050 | 0.124 | 0.071 | 186 |
+| ACCESS | 0.106 | 0.224 | 0.144 | 134 |
+| PLATFORM | 0.015 | 0.033 | 0.020 | 30 |
+
+## Precision versus coverage
+
+| Coverage | Confidence ≥ | Typed precision | Retained recall |
+|---:|---:|---:|---:|
+| 10% | 0.825 | 0.130 | 0.031 |
+| 20% | 0.734 | 0.103 | 0.049 |
+| 30% | 0.657 | 0.083 | 0.060 |
+| 40% | 0.608 | 0.070 | 0.067 |
+| 50% | 0.562 | 0.065 | 0.078 |
+| 60% | 0.525 | 0.071 | 0.101 |
+| 70% | 0.492 | 0.062 | 0.104 |
+| 80% | 0.444 | 0.058 | 0.111 |
+| 90% | 0.381 | 0.057 | 0.122 |
+| 100% | 0.196 | 0.053 | 0.127 |
diff --git a/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed2_dev_manual.md b/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed2_dev_manual.md
new file mode 100644
index 0000000..6122ef8
--- /dev/null
+++ b/reports/neural/run-2/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed2_dev_manual.md
@@ -0,0 +1,57 @@
+# Hand-labelled dev: distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed2
+
+- Gold: `annotations/pilot/pilot-2.jsonl` (dev split of `splits/pool-v1.json`; origin: manual; 10 documents)
+- Predictions: `reports/neural/predictions/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed2.jsonl` (distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed2)
+- Bootstrap: 1000 resamples, project clusters, seed 0
+- Documents: 10 (9 with gold conditions, 1 without)
+
+## Headline metrics (95% bootstrap intervals)
+
+| Metric | Estimate | 95% CI |
+|---|---:|:---:|
+| Typed condition micro-F1 (span + category + role) | 0.192 | [0.043, 0.364] |
+| Exact span F1 | 0.192 | [0.043, 0.364] |
+| Exact span precision | 0.143 | [0.033, 0.333] |
+| Exact span recall | 0.294 | [0.067, 0.526] |
+| Role macro-F1 (roles with gold support) | 0.132 | [0.038, 0.381] |
+| Category macro-F1 | 0.154 | [0.056, 0.341] |
+| Group exact-match F1 | 0.000 | [0.000, 0.000] |
+| Complete-document exact match, documents with conditions | 0.111 | [0.000, 0.300] |
+| Complete-document exact match, documents without conditions | 0.000 | [0.000, 0.000] |
+| False prerequisite rate (lower is better) | 0.591 | [0.200, 0.812] |
+| Reversed meaning rate (lower is better) | 0.231 | [0.000, 0.600] |
+| Category accuracy on exactly matched spans | 1.000 | [1.000, 1.000] |
+| Role accuracy on exactly matched spans | 1.000 | [1.000, 1.000] |
+
+## Per-role results (exact span + role)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| REQUIRED | 0.227 | 0.312 | 0.263 | 16 |
+| EXCEPTION | 0.000 | 0.000 | 0.000 | 0 |
+| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 0 |
+| UNCERTAIN | 0.000 | 0.000 | 0.000 | 1 |
+
+## Per-category results (exact span + category)
+
+| Label | Precision | Recall | F1 | Gold support |
+|---|---:|---:|---:|---:|
+| CONFIGURATION | 0.000 | 0.000 | 0.000 | 1 |
+| USAGE | 0.077 | 0.222 | 0.114 | 9 |
+| ACCESS | 0.429 | 0.600 | 0.500 | 5 |
+| PLATFORM | 0.000 | 0.000 | 0.000 | 2 |
+
+## Precision versus coverage
+
+| Coverage | Confidence ≥ | Typed precision | Retained recall |
+|---:|---:|---:|---:|
+| 11% | 0.890 | 0.750 | 0.176 |
+| 20% | 0.762 | 0.429 | 0.176 |
+| 29% | 0.736 | 0.400 | 0.235 |
+| 40% | 0.667 | 0.357 | 0.294 |
+| 51% | 0.589 | 0.278 | 0.294 |
+| 60% | 0.556 | 0.238 | 0.294 |
+| 69% | 0.498 | 0.208 | 0.294 |
+| 80% | 0.417 | 0.179 | 0.294 |
+| 91% | 0.337 | 0.156 | 0.294 |
+| 100% | 0.244 | 0.143 | 0.294 |
diff --git a/reports/neural/run-2/experiment_deberta.md b/reports/neural/run-2/experiment_deberta.md
new file mode 100644
index 0000000..954cd3e
--- /dev/null
+++ b/reports/neural/run-2/experiment_deberta.md
@@ -0,0 +1,32 @@
+# Experiment: deberta
+
+- Config: `configs/experiments/deberta.toml`
+- Gold: 3 file(s): 239 train docs
+- Dev gold: `annotations/batches/batch-03.jsonl`, `annotations/batches/batch-06.jsonl`: 172 dev docs (early stopping and this table)
+- Split: `splits/pool-v1.json` (41d7354e1a13)
+
+## Runs (dev split, 95% leakage-group bootstrap intervals)
+
+| Run | Docs | Typed F1 | Span F1 | Role macro-F1 | Group F1 | False prereq. | Best epoch | Seconds |
+|---|---:|---:|---:|---:|---:|---:|---:|---:|
+| deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed0 | 239 | 0.072 [0.054, 0.094] | 0.089 [0.068, 0.114] | 0.036 [0.022, 0.058] | 0.000 [0.000, 0.000] | 0.661 [0.623, 0.695] | 15 | 267.1 |
+| deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed1 | 239 | 0.077 [0.060, 0.100] | 0.098 [0.078, 0.121] | 0.041 [0.026, 0.060] | 0.000 [0.000, 0.000] | 0.658 [0.619, 0.691] | 15 | 264.9 |
+| deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed2 | 239 | 0.070 [0.051, 0.093] | 0.090 [0.070, 0.115] | 0.040 [0.024, 0.063] | 0.000 [0.000, 0.000] | 0.701 [0.663, 0.732] | 11 | 246.3 |
+| deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0 | 239 | 0.133 [0.108, 0.164] | 0.165 [0.141, 0.194] | 0.087 [0.059, 0.119] | 0.000 [0.000, 0.000] | 0.607 [0.566, 0.642] | 9 | 209.5 |
+| deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed1 | 239 | 0.132 [0.110, 0.160] | 0.161 [0.136, 0.190] | 0.069 [0.050, 0.090] | 0.000 [0.000, 0.000] | 0.596 [0.555, 0.635] | 15 | 262.9 |
+| deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed2 | 239 | 0.130 [0.102, 0.162] | 0.152 [0.124, 0.184] | 0.093 [0.054, 0.142] | 0.000 [0.000, 0.000] | 0.577 [0.533, 0.616] | 9 | 209.9 |
+| deberta-2-base-bio_weightingnone-learning_rate2e-05-seed0 | 239 | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 0.955 [0.891, 1.000] | 1 | 68.6 |
+| deberta-2-base-bio_weightingnone-learning_rate2e-05-seed1 | 239 | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 0.937 [0.880, 0.978] | 1 | 68.6 |
+| deberta-2-base-bio_weightingnone-learning_rate2e-05-seed2 | 239 | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 0.959 [0.935, 0.978] | 1 | 68.4 |
+| deberta-2-base-bio_weightingnone-learning_rate5e-05-seed0 | 239 | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 1 | 68.5 |
+| deberta-2-base-bio_weightingnone-learning_rate5e-05-seed1 | 239 | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 1 | 68.2 |
+| deberta-2-base-bio_weightingnone-learning_rate5e-05-seed2 | 239 | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 1 | 68.3 |
+
+## Across seeds (typed F1)
+
+| Variant | Seeds | Mean | SD |
+|---|---:|---:|---:|
+| deberta-2-base-bio_weightingsqrt-learning_rate2e-05 | 3 | 0.073 | 0.004 |
+| deberta-2-base-bio_weightingsqrt-learning_rate5e-05 | 3 | 0.131 | 0.001 |
+| deberta-2-base-bio_weightingnone-learning_rate2e-05 | 3 | 0.000 | 0.000 |
+| deberta-2-base-bio_weightingnone-learning_rate5e-05 | 3 | 0.000 | 0.000 |
diff --git a/reports/neural/run-2/experiment_distilbert.md b/reports/neural/run-2/experiment_distilbert.md
new file mode 100644
index 0000000..2fda2e8
--- /dev/null
+++ b/reports/neural/run-2/experiment_distilbert.md
@@ -0,0 +1,32 @@
+# Experiment: distilbert
+
+- Config: `configs/experiments/distilbert.toml`
+- Gold: 3 file(s): 239 train docs
+- Dev gold: `annotations/batches/batch-03.jsonl`, `annotations/batches/batch-06.jsonl`: 172 dev docs (early stopping and this table)
+- Split: `splits/pool-v1.json` (41d7354e1a13)
+
+## Runs (dev split, 95% leakage-group bootstrap intervals)
+
+| Run | Docs | Typed F1 | Span F1 | Role macro-F1 | Group F1 | False prereq. | Best epoch | Seconds |
+|---|---:|---:|---:|---:|---:|---:|---:|---:|
+| distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed0 | 239 | 0.039 [0.028, 0.053] | 0.056 [0.042, 0.073] | 0.037 [0.020, 0.055] | 0.000 [0.000, 0.000] | 0.724 [0.684, 0.756] | 8 | 101.3 |
+| distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed1 | 239 | 0.042 [0.031, 0.054] | 0.058 [0.044, 0.071] | 0.040 [0.020, 0.065] | 0.000 [0.000, 0.000] | 0.662 [0.623, 0.694] | 12 | 147.3 |
+| distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed2 | 239 | 0.033 [0.023, 0.045] | 0.044 [0.031, 0.058] | 0.025 [0.011, 0.041] | 0.000 [0.000, 0.000] | 0.667 [0.630, 0.700] | 14 | 147.2 |
+| distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed0 | 239 | 0.074 [0.051, 0.101] | 0.101 [0.077, 0.128] | 0.047 [0.027, 0.067] | 0.000 [0.000, 0.000] | 0.554 [0.491, 0.603] | 13 | 147.2 |
+| distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed1 | 239 | 0.041 [0.029, 0.055] | 0.052 [0.039, 0.065] | 0.035 [0.017, 0.058] | 0.000 [0.000, 0.000] | 0.770 [0.744, 0.791] | 4 | 68.8 |
+| distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed2 | 239 | 0.075 [0.052, 0.103] | 0.101 [0.076, 0.130] | 0.060 [0.033, 0.093] | 0.000 [0.000, 0.000] | 0.541 [0.473, 0.600] | 15 | 147.5 |
+| distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed0 | 239 | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 1 | 38.8 |
+| distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed1 | 239 | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 1 | 38.8 |
+| distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed2 | 239 | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 1 | 38.9 |
+| distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed0 | 239 | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 1 | 39.0 |
+| distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed1 | 239 | 0.064 [0.049, 0.081] | 0.086 [0.063, 0.105] | 0.042 [0.020, 0.080] | 0.000 [0.000, 0.000] | 0.510 [0.429, 0.571] | 14 | 145.8 |
+| distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed2 | 239 | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 0.000 [0.000, 0.000] | 1 | 38.9 |
+
+## Across seeds (typed F1)
+
+| Variant | Seeds | Mean | SD |
+|---|---:|---:|---:|
+| distilbert-2-base-bio_weightingsqrt-learning_rate2e-05 | 3 | 0.038 | 0.004 |
+| distilbert-2-base-bio_weightingsqrt-learning_rate5e-05 | 3 | 0.063 | 0.019 |
+| distilbert-2-base-bio_weightingnone-learning_rate2e-05 | 3 | 0.000 | 0.000 |
+| distilbert-2-base-bio_weightingnone-learning_rate5e-05 | 3 | 0.021 | 0.037 |
diff --git a/reports/neural/run-2/metadata/deberta-2-base-bio_weightingnone-learning_rate2e-05-seed0.metadata.json b/reports/neural/run-2/metadata/deberta-2-base-bio_weightingnone-learning_rate2e-05-seed0.metadata.json
new file mode 100644
index 0000000..ce77f0e
--- /dev/null
+++ b/reports/neural/run-2/metadata/deberta-2-base-bio_weightingnone-learning_rate2e-05-seed0.metadata.json
@@ -0,0 +1,176 @@
+{
+  "base_model": "microsoft/deberta-v3-small",
+  "base_revision": "a36c739020e01763fe789b4b85e2df55d6180012",
+  "best_dev_typed_f1": 0.0,
+  "best_epoch": 1,
+  "bio_weights": [
+    1.0,
+    1.0,
+    1.0
+  ],
+  "config": {
+    "attribute_loss_weight": 1.0,
+    "base_model": "microsoft/deberta-v3-small",
+    "batch_size": 8,
+    "bio_weighting": "none",
+    "context_tokens": 48,
+    "device": "auto",
+    "epochs": 15,
+    "gradient_accumulation": 2,
+    "group_loss_weight": 1.0,
+    "learning_rate": 2e-05,
+    "max_grad_norm": 1.0,
+    "max_length": 512,
+    "max_train_documents": null,
+    "mlflow_experiment": "triggermap",
+    "model_id": "deberta-2-base-bio_weightingnone-learning_rate2e-05-seed0",
+    "patience": 3,
+    "revision": "a36c739020e01763fe789b4b85e2df55d6180012",
+    "seed": 0,
+    "split_assignment_sha256": "41d7354e1a13378667dc5cda74e3ed932f770af94cbde6e12460863981290067",
+    "stride": 64,
+    "use_context": true,
+    "warmup_ratio": 0.1,
+    "weight_decay": 0.01
+  },
+  "device": "cuda",
+  "epochs": [
+    {
+      "dev": {
+        "category_acc_on_matched_spans": 0.0,
+        "category_macro_f1": 0.0,
+        "doc_exact_with_conditions": 0.0,
+        "doc_exact_without_conditions": 0.88235,
+        "false_prerequisite_rate": 0.95455,
+        "group_f1": 0.0,
+        "reversed_meaning_rate": 0.42857,
+        "role_acc_on_matched_spans": 0.0,
+        "role_macro_f1": 0.0,
+        "span_f1": 0.0,
+        "span_precision": 0.0,
+        "span_recall": 0.0,
+        "typed_f1": 0.0
+      },
+      "epoch": 1,
+      "train_loss": {
+        "bio": 1.02012,
+        "category": 1.52449,
+        "group": 1.25002,
+        "role": 1.56773
+      }
+    },
+    {
+      "dev": {
+        "category_acc_on_matched_spans": 0.0,
+        "category_macro_f1": 0.0,
+        "doc_exact_with_conditions": 0.0,
+        "doc_exact_without_conditions": 1.0,
+        "false_prerequisite_rate": 0.0,
+        "group_f1": 0.0,
+        "reversed_meaning_rate": 0.0,
+        "role_acc_on_matched_spans": 0.0,
+        "role_macro_f1": 0.0,
+        "span_f1": 0.0,
+        "span_precision": 0.0,
+        "span_recall": 0.0,
+        "typed_f1": 0.0
+      },
+      "epoch": 2,
+      "train_loss": {
+        "bio": 0.31637,
+        "category": 1.28393,
+        "group": 1.02918,
+        "role": 1.24429
+      }
+    },
+    {
+      "dev": {
+        "category_acc_on_matched_spans": 0.0,
+        "category_macro_f1": 0.0,
+        "doc_exact_with_conditions": 0.0,
+        "doc_exact_without_conditions": 1.0,
+        "false_prerequisite_rate": 1.0,
+        "group_f1": 0.0,
+        "reversed_meaning_rate": 0.0,
+        "role_acc_on_matched_spans": 0.0,
+        "role_macro_f1": 0.0,
+        "span_f1": 0.0,
+        "span_precision": 0.0,
+        "span_recall": 0.0,
+        "typed_f1": 0.0
+      },
+      "epoch": 3,
+      "train_loss": {
+        "bio": 0.27597,
+        "category": 1.04171,
+        "group": 0.82463,
+        "role": 0.9751
+      }
+    },
+    {
+      "dev": {
+        "category_acc_on_matched_spans": 0.0,
+        "category_macro_f1": 0.0,
+        "doc_exact_with_conditions": 0.0,
+        "doc_exact_without_conditions": 1.0,
+        "false_prerequisite_rate": 1.0,
+        "group_f1": 0.0,
+        "reversed_meaning_rate": 0.0,
+        "role_acc_on_matched_spans": 0.0,
+        "role_macro_f1": 0.0,
+        "span_f1": 0.0,
+        "span_precision": 0.0,
+        "span_recall": 0.0,
+        "typed_f1": 0.0
+      },
+      "epoch": 4,
+      "train_loss": {
+        "bio": 0.26546,
+        "category": 0.79936,
+        "group": 0.59181,
+        "role": 0.76431
+      }
+    }
+  ],
+  "family": "transformer",
+  "label_counts": {
+    "category": {
+      "ACCESS": 359,
+      "CONFIGURATION": 228,
+      "PLATFORM": 125,
+      "USAGE": 542
+    },
+    "group_pairs": {
+      "ALL": 138,
+      "ANY": 26,
+      "NONE": 192,
+      "UNRESOLVED": 9
+    },
+    "role": {
+      "EXCEPTION": 48,
+      "NOT_REQUIRED": 97,
+      "REQUIRED": 865,
+      "UNCERTAIN": 244
+    }
+  },
+  "model_id": "deberta-2-base-bio_weightingnone-learning_rate2e-05-seed0",
+  "peak_gpu_memory_mb": 5334,
+  "preprocessing_version": "1",
+  "split_assignment_sha256": "41d7354e1a13378667dc5cda74e3ed932f770af94cbde6e12460863981290067",
+  "train_seconds": 68.6,
+  "training_documents": 239,
+  "training_hash": "f314153dd248519397e7726525fbd72c533c57e1e241b6474028ce4457741a3a",
+  "training_origins": {
+    "manual": 7,
+    "model_draft_accepted": 219,
+    "model_draft_revised": 13
+  },
+  "unreachable_spans": 2,
+  "window": {
+    "context_tokens": 48,
+    "max_length": 512,
+    "stride": 64,
+    "use_context": true
+  },
+  "windows": 493
+}
\ No newline at end of file
diff --git a/reports/neural/run-2/metadata/deberta-2-base-bio_weightingnone-learning_rate2e-05-seed1.metadata.json b/reports/neural/run-2/metadata/deberta-2-base-bio_weightingnone-learning_rate2e-05-seed1.metadata.json
new file mode 100644
index 0000000..52ae531
--- /dev/null
+++ b/reports/neural/run-2/metadata/deberta-2-base-bio_weightingnone-learning_rate2e-05-seed1.metadata.json
@@ -0,0 +1,176 @@
+{
+  "base_model": "microsoft/deberta-v3-small",
+  "base_revision": "a36c739020e01763fe789b4b85e2df55d6180012",
+  "best_dev_typed_f1": 0.0,
+  "best_epoch": 1,
+  "bio_weights": [
+    1.0,
+    1.0,
+    1.0
+  ],
+  "config": {
+    "attribute_loss_weight": 1.0,
+    "base_model": "microsoft/deberta-v3-small",
+    "batch_size": 8,
+    "bio_weighting": "none",
+    "context_tokens": 48,
+    "device": "auto",
+    "epochs": 15,
+    "gradient_accumulation": 2,
+    "group_loss_weight": 1.0,
+    "learning_rate": 2e-05,
+    "max_grad_norm": 1.0,
+    "max_length": 512,
+    "max_train_documents": null,
+    "mlflow_experiment": "triggermap",
+    "model_id": "deberta-2-base-bio_weightingnone-learning_rate2e-05-seed1",
+    "patience": 3,
+    "revision": "a36c739020e01763fe789b4b85e2df55d6180012",
+    "seed": 1,
+    "split_assignment_sha256": "41d7354e1a13378667dc5cda74e3ed932f770af94cbde6e12460863981290067",
+    "stride": 64,
+    "use_context": true,
+    "warmup_ratio": 0.1,
+    "weight_decay": 0.01
+  },
+  "device": "cuda",
+  "epochs": [
+    {
+      "dev": {
+        "category_acc_on_matched_spans": 0.0,
+        "category_macro_f1": 0.0,
+        "doc_exact_with_conditions": 0.0,
+        "doc_exact_without_conditions": 0.0,
+        "false_prerequisite_rate": 0.93684,
+        "group_f1": 0.0,
+        "reversed_meaning_rate": 0.08974,
+        "role_acc_on_matched_spans": 0.0,
+        "role_macro_f1": 0.0,
+        "span_f1": 0.0,
+        "span_precision": 0.0,
+        "span_recall": 0.0,
+        "typed_f1": 0.0
+      },
+      "epoch": 1,
+      "train_loss": {
+        "bio": 1.1072,
+        "category": 1.40402,
+        "group": 3.56219,
+        "role": 1.49423
+      }
+    },
+    {
+      "dev": {
+        "category_acc_on_matched_spans": 0.0,
+        "category_macro_f1": 0.0,
+        "doc_exact_with_conditions": 0.0,
+        "doc_exact_without_conditions": 1.0,
+        "false_prerequisite_rate": 0.0,
+        "group_f1": 0.0,
+        "reversed_meaning_rate": 0.0,
+        "role_acc_on_matched_spans": 0.0,
+        "role_macro_f1": 0.0,
+        "span_f1": 0.0,
+        "span_precision": 0.0,
+        "span_recall": 0.0,
+        "typed_f1": 0.0
+      },
+      "epoch": 2,
+      "train_loss": {
+        "bio": 0.35897,
+        "category": 1.26845,
+        "group": 0.99526,
+        "role": 1.33168
+      }
+    },
+    {
+      "dev": {
+        "category_acc_on_matched_spans": 0.0,
+        "category_macro_f1": 0.0,
+        "doc_exact_with_conditions": 0.0,
+        "doc_exact_without_conditions": 1.0,
+        "false_prerequisite_rate": 0.8,
+        "group_f1": 0.0,
+        "reversed_meaning_rate": 0.0,
+        "role_acc_on_matched_spans": 0.0,
+        "role_macro_f1": 0.0,
+        "span_f1": 0.0,
+        "span_precision": 0.0,
+        "span_recall": 0.0,
+        "typed_f1": 0.0
+      },
+      "epoch": 3,
+      "train_loss": {
+        "bio": 0.28103,
+        "category": 1.01439,
+        "group": 0.7173,
+        "role": 1.03983
+      }
+    },
+    {
+      "dev": {
+        "category_acc_on_matched_spans": 0.0,
+        "category_macro_f1": 0.0,
+        "doc_exact_with_conditions": 0.0,
+        "doc_exact_without_conditions": 1.0,
+        "false_prerequisite_rate": 1.0,
+        "group_f1": 0.0,
+        "reversed_meaning_rate": 0.0,
+        "role_acc_on_matched_spans": 0.0,
+        "role_macro_f1": 0.0,
+        "span_f1": 0.0,
+        "span_precision": 0.0,
+        "span_recall": 0.0,
+        "typed_f1": 0.0
+      },
+      "epoch": 4,
+      "train_loss": {
+        "bio": 0.26988,
+        "category": 0.76835,
+        "group": 0.46362,
+        "role": 0.79812
+      }
+    }
+  ],
+  "family": "transformer",
+  "label_counts": {
+    "category": {
+      "ACCESS": 359,
+      "CONFIGURATION": 228,
+      "PLATFORM": 125,
+      "USAGE": 542
+    },
+    "group_pairs": {
+      "ALL": 138,
+      "ANY": 26,
+      "NONE": 192,
+      "UNRESOLVED": 9
+    },
+    "role": {
+      "EXCEPTION": 48,
+      "NOT_REQUIRED": 97,
+      "REQUIRED": 865,
+      "UNCERTAIN": 244
+    }
+  },
+  "model_id": "deberta-2-base-bio_weightingnone-learning_rate2e-05-seed1",
+  "peak_gpu_memory_mb": 5333,
+  "preprocessing_version": "1",
+  "split_assignment_sha256": "41d7354e1a13378667dc5cda74e3ed932f770af94cbde6e12460863981290067",
+  "train_seconds": 68.6,
+  "training_documents": 239,
+  "training_hash": "f314153dd248519397e7726525fbd72c533c57e1e241b6474028ce4457741a3a",
+  "training_origins": {
+    "manual": 7,
+    "model_draft_accepted": 219,
+    "model_draft_revised": 13
+  },
+  "unreachable_spans": 2,
+  "window": {
+    "context_tokens": 48,
+    "max_length": 512,
+    "stride": 64,
+    "use_context": true
+  },
+  "windows": 493
+}
\ No newline at end of file
diff --git a/reports/neural/run-2/metadata/deberta-2-base-bio_weightingnone-learning_rate2e-05-seed2.metadata.json b/reports/neural/run-2/metadata/deberta-2-base-bio_weightingnone-learning_rate2e-05-seed2.metadata.json
new file mode 100644
index 0000000..e258a98
--- /dev/null
+++ b/reports/neural/run-2/metadata/deberta-2-base-bio_weightingnone-learning_rate2e-05-seed2.metadata.json
@@ -0,0 +1,176 @@
+{
+  "base_model": "microsoft/deberta-v3-small",
+  "base_revision": "a36c739020e01763fe789b4b85e2df55d6180012",
+  "best_dev_typed_f1": 0.0,
+  "best_epoch": 1,
+  "bio_weights": [
+    1.0,
+    1.0,
+    1.0
+  ],
+  "config": {
+    "attribute_loss_weight": 1.0,
+    "base_model": "microsoft/deberta-v3-small",
+    "batch_size": 8,
+    "bio_weighting": "none",
+    "context_tokens": 48,
+    "device": "auto",
+    "epochs": 15,
+    "gradient_accumulation": 2,
+    "group_loss_weight": 1.0,
+    "learning_rate": 2e-05,
+    "max_grad_norm": 1.0,
+    "max_length": 512,
+    "max_train_documents": null,
+    "mlflow_experiment": "triggermap",
+    "model_id": "deberta-2-base-bio_weightingnone-learning_rate2e-05-seed2",
+    "patience": 3,
+    "revision": "a36c739020e01763fe789b4b85e2df55d6180012",
+    "seed": 2,
+    "split_assignment_sha256": "41d7354e1a13378667dc5cda74e3ed932f770af94cbde6e12460863981290067",
+    "stride": 64,
+    "use_context": true,
+    "warmup_ratio": 0.1,
+    "weight_decay": 0.01
+  },
+  "device": "cuda",
+  "epochs": [
+    {
+      "dev": {
+        "category_acc_on_matched_spans": 0.0,
+        "category_macro_f1": 0.0,
+        "doc_exact_with_conditions": 0.0,
+        "doc_exact_without_conditions": 0.29412,
+        "false_prerequisite_rate": 0.95913,
+        "group_f1": 0.0,
+        "reversed_meaning_rate": 0.47222,
+        "role_acc_on_matched_spans": 0.0,
+        "role_macro_f1": 0.0,
+        "span_f1": 0.0,
+        "span_precision": 0.0,
+        "span_recall": 0.0,
+        "typed_f1": 0.0
+      },
+      "epoch": 1,
+      "train_loss": {
+        "bio": 1.11276,
+        "category": 1.48643,
+        "group": 2.81574,
+        "role": 1.53033
+      }
+    },
+    {
+      "dev": {
+        "category_acc_on_matched_spans": 0.0,
+        "category_macro_f1": 0.0,
+        "doc_exact_with_conditions": 0.0,
+        "doc_exact_without_conditions": 1.0,
+        "false_prerequisite_rate": 1.0,
+        "group_f1": 0.0,
+        "reversed_meaning_rate": 0.0,
+        "role_acc_on_matched_spans": 0.0,
+        "role_macro_f1": 0.0,
+        "span_f1": 0.0,
+        "span_precision": 0.0,
+        "span_recall": 0.0,
+        "typed_f1": 0.0
+      },
+      "epoch": 2,
+      "train_loss": {
+        "bio": 0.31532,
+        "category": 1.3081,
+        "group": 1.20212,
+        "role": 1.33973
+      }
+    },
+    {
+      "dev": {
+        "category_acc_on_matched_spans": 0.0,
+        "category_macro_f1": 0.0,
+        "doc_exact_with_conditions": 0.0,
+        "doc_exact_without_conditions": 1.0,
+        "false_prerequisite_rate": 1.0,
+        "group_f1": 0.0,
+        "reversed_meaning_rate": 0.0,
+        "role_acc_on_matched_spans": 0.0,
+        "role_macro_f1": 0.0,
+        "span_f1": 0.0,
+        "span_precision": 0.0,
+        "span_recall": 0.0,
+        "typed_f1": 0.0
+      },
+      "epoch": 3,
+      "train_loss": {
+        "bio": 0.28181,
+        "category": 1.06462,
+        "group": 0.76165,
+        "role": 1.11048
+      }
+    },
+    {
+      "dev": {
+        "category_acc_on_matched_spans": 0.0,
+        "category_macro_f1": 0.0,
+        "doc_exact_with_conditions": 0.0,
+        "doc_exact_without_conditions": 1.0,
+        "false_prerequisite_rate": 0.90909,
+        "group_f1": 0.0,
+        "reversed_meaning_rate": 0.0,
+        "role_acc_on_matched_spans": 0.0,
+        "role_macro_f1": 0.0,
+        "span_f1": 0.0,
+        "span_precision": 0.0,
+        "span_recall": 0.0,
+        "typed_f1": 0.0
+      },
+      "epoch": 4,
+      "train_loss": {
+        "bio": 0.26505,
+        "category": 0.85117,
+        "group": 0.52809,
+        "role": 0.90258
+      }
+    }
+  ],
+  "family": "transformer",
+  "label_counts": {
+    "category": {
+      "ACCESS": 359,
+      "CONFIGURATION": 228,
+      "PLATFORM": 125,
+      "USAGE": 542
+    },
+    "group_pairs": {
+      "ALL": 138,
+      "ANY": 26,
+      "NONE": 192,
+      "UNRESOLVED": 9
+    },
+    "role": {
+      "EXCEPTION": 48,
+      "NOT_REQUIRED": 97,
+      "REQUIRED": 865,
+      "UNCERTAIN": 244
+    }
+  },
+  "model_id": "deberta-2-base-bio_weightingnone-learning_rate2e-05-seed2",
+  "peak_gpu_memory_mb": 5329,
+  "preprocessing_version": "1",
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+}
\ No newline at end of file
diff --git a/reports/neural/run-2/metadata/deberta-2-base-bio_weightingnone-learning_rate5e-05-seed0.metadata.json b/reports/neural/run-2/metadata/deberta-2-base-bio_weightingnone-learning_rate5e-05-seed0.metadata.json
new file mode 100644
index 0000000..444355b
--- /dev/null
+++ b/reports/neural/run-2/metadata/deberta-2-base-bio_weightingnone-learning_rate5e-05-seed0.metadata.json
@@ -0,0 +1,176 @@
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+}
\ No newline at end of file
diff --git a/reports/neural/run-2/metadata/deberta-2-base-bio_weightingnone-learning_rate5e-05-seed1.metadata.json b/reports/neural/run-2/metadata/deberta-2-base-bio_weightingnone-learning_rate5e-05-seed1.metadata.json
new file mode 100644
index 0000000..ca3ca21
--- /dev/null
+++ b/reports/neural/run-2/metadata/deberta-2-base-bio_weightingnone-learning_rate5e-05-seed1.metadata.json
@@ -0,0 +1,176 @@
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+}
\ No newline at end of file
diff --git a/reports/neural/run-2/metadata/deberta-2-base-bio_weightingnone-learning_rate5e-05-seed2.metadata.json b/reports/neural/run-2/metadata/deberta-2-base-bio_weightingnone-learning_rate5e-05-seed2.metadata.json
new file mode 100644
index 0000000..cdf1469
--- /dev/null
+++ b/reports/neural/run-2/metadata/deberta-2-base-bio_weightingnone-learning_rate5e-05-seed2.metadata.json
@@ -0,0 +1,176 @@
+{
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+}
\ No newline at end of file
diff --git a/reports/neural/run-2/metadata/deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed0.metadata.json b/reports/neural/run-2/metadata/deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed0.metadata.json
new file mode 100644
index 0000000..22d25bd
--- /dev/null
+++ b/reports/neural/run-2/metadata/deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed0.metadata.json
@@ -0,0 +1,440 @@
+{
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+    "mlflow_experiment": "triggermap",
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+}
\ No newline at end of file
diff --git a/reports/neural/run-2/metadata/deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed1.metadata.json b/reports/neural/run-2/metadata/deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed1.metadata.json
new file mode 100644
index 0000000..ea33a61
--- /dev/null
+++ b/reports/neural/run-2/metadata/deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed1.metadata.json
@@ -0,0 +1,440 @@
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+}
\ No newline at end of file
diff --git a/reports/neural/run-2/metadata/deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed2.metadata.json b/reports/neural/run-2/metadata/deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed2.metadata.json
new file mode 100644
index 0000000..049f843
--- /dev/null
+++ b/reports/neural/run-2/metadata/deberta-2-base-bio_weightingsqrt-learning_rate2e-05-seed2.metadata.json
@@ -0,0 +1,416 @@
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+}
\ No newline at end of file
diff --git a/reports/neural/run-2/metadata/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0.metadata.json b/reports/neural/run-2/metadata/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0.metadata.json
new file mode 100644
index 0000000..97774ef
--- /dev/null
+++ b/reports/neural/run-2/metadata/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0.metadata.json
@@ -0,0 +1,368 @@
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+}
\ No newline at end of file
diff --git a/reports/neural/run-2/metadata/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed1.metadata.json b/reports/neural/run-2/metadata/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed1.metadata.json
new file mode 100644
index 0000000..437696d
--- /dev/null
+++ b/reports/neural/run-2/metadata/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed1.metadata.json
@@ -0,0 +1,440 @@
+{
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+}
\ No newline at end of file
diff --git a/reports/neural/run-2/metadata/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed2.metadata.json b/reports/neural/run-2/metadata/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed2.metadata.json
new file mode 100644
index 0000000..c35c3bb
--- /dev/null
+++ b/reports/neural/run-2/metadata/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed2.metadata.json
@@ -0,0 +1,368 @@
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+}
\ No newline at end of file
diff --git a/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed0.metadata.json b/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed0.metadata.json
new file mode 100644
index 0000000..a1a1386
--- /dev/null
+++ b/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed0.metadata.json
@@ -0,0 +1,176 @@
+{
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+}
\ No newline at end of file
diff --git a/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed1.metadata.json b/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed1.metadata.json
new file mode 100644
index 0000000..9d4c351
--- /dev/null
+++ b/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed1.metadata.json
@@ -0,0 +1,176 @@
+{
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+}
\ No newline at end of file
diff --git a/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed2.metadata.json b/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed2.metadata.json
new file mode 100644
index 0000000..0143df7
--- /dev/null
+++ b/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingnone-learning_rate2e-05-seed2.metadata.json
@@ -0,0 +1,176 @@
+{
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+}
\ No newline at end of file
diff --git a/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed0.metadata.json b/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed0.metadata.json
new file mode 100644
index 0000000..9e86a87
--- /dev/null
+++ b/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed0.metadata.json
@@ -0,0 +1,176 @@
+{
+  "base_model": "distilbert/distilbert-base-cased",
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+  "best_epoch": 1,
+  "bio_weights": [
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+    "base_model": "distilbert/distilbert-base-cased",
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+}
\ No newline at end of file
diff --git a/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed1.metadata.json b/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed1.metadata.json
new file mode 100644
index 0000000..82e7cd7
--- /dev/null
+++ b/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed1.metadata.json
@@ -0,0 +1,440 @@
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+  },
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+}
\ No newline at end of file
diff --git a/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed2.metadata.json b/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed2.metadata.json
new file mode 100644
index 0000000..e299778
--- /dev/null
+++ b/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingnone-learning_rate5e-05-seed2.metadata.json
@@ -0,0 +1,176 @@
+{
+  "base_model": "distilbert/distilbert-base-cased",
+  "base_revision": "6ea81172465e8b0ad3fddeed32b986cdcdcffcf0",
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+}
\ No newline at end of file
diff --git a/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed0.metadata.json b/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed0.metadata.json
new file mode 100644
index 0000000..4e2b17b
--- /dev/null
+++ b/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed0.metadata.json
@@ -0,0 +1,344 @@
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+}
\ No newline at end of file
diff --git a/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed1.metadata.json b/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed1.metadata.json
new file mode 100644
index 0000000..ff4402b
--- /dev/null
+++ b/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed1.metadata.json
@@ -0,0 +1,440 @@
+{
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+}
\ No newline at end of file
diff --git a/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed2.metadata.json b/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed2.metadata.json
new file mode 100644
index 0000000..78b5277
--- /dev/null
+++ b/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingsqrt-learning_rate2e-05-seed2.metadata.json
@@ -0,0 +1,440 @@
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+}
\ No newline at end of file
diff --git a/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed0.metadata.json b/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed0.metadata.json
new file mode 100644
index 0000000..5a89954
--- /dev/null
+++ b/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed0.metadata.json
@@ -0,0 +1,440 @@
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+}
\ No newline at end of file
diff --git a/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed1.metadata.json b/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed1.metadata.json
new file mode 100644
index 0000000..1e8c8a9
--- /dev/null
+++ b/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed1.metadata.json
@@ -0,0 +1,248 @@
+{
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+}
\ No newline at end of file
diff --git a/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed2.metadata.json b/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed2.metadata.json
new file mode 100644
index 0000000..c754914
--- /dev/null
+++ b/reports/neural/run-2/metadata/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed2.metadata.json
@@ -0,0 +1,440 @@
+{
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diff --git a/reports/neural/run-2/predictions/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0.jsonl b/reports/neural/run-2/predictions/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0.jsonl
new file mode 100644
index 0000000..d1e651d
--- /dev/null
+++ b/reports/neural/run-2/predictions/deberta-2-base-bio_weightingsqrt-learning_rate5e-05-seed0.jsonl
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diff --git a/reports/neural/run-2/predictions/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed2.jsonl b/reports/neural/run-2/predictions/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed2.jsonl
new file mode 100644
index 0000000..8b70199
--- /dev/null
+++ b/reports/neural/run-2/predictions/distilbert-2-base-bio_weightingsqrt-learning_rate5e-05-seed2.jsonl
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