Issues

• Support OpenMP parallelization with negative constraints

  ms609/TreeSearch#288 · Filter by author ms609 opened on Sep 8, 2026

• Consolidate test suite

  ms609/TreeSearch#268 · Filter by author ms609 opened on Jul 9, 2026 · v2.0

• Extend TreeLength() to score non-binary (polytomous) trees

  ms609/TreeSearch#259 · Filter by author ms609 opened on Jun 25, 2026

• NJ alternative - Centroid tree

  ms609/TreeSearch#240 · Filter by author ms609 opened on Apr 9, 2026
  1

• CID mode segfaults during TBR after cpp-search merge

  bug
  ms609/TreeSearch#228 · Filter by author ms609 opened on Mar 25, 2026

• Outgroup v.s. ingroup resolution

  ms609/TreeSearch#209 · Filter by author RussellGarwood opened on Mar 16, 2026
  4

• Integer underflow in Jackknife?

  ms609/TreeSearch#206 · Filter by author ms609 opened on Jan 15, 2026

• Move imported packages to Suggests

  ms609/TreeSearch#201 · Filter by author ms609 opened on Nov 4, 2025

• Full test suite for PresCont()

  ms609/TreeSearch#196 · Filter by author ms609 opened on Jul 29, 2025

• Decomposed characters and implied weights analyses

  ms609/TreeSearch#194 · Filter by author RussellGarwood opened on Jul 23, 2025
  15

• Quartet sampling

  ms609/TreeSearch#193 · Filter by author ms609 opened on Jul 17, 2025

• Legend colours in app

  ms609/TreeSearch#191 · Filter by author ms609 opened on Jul 7, 2025

• Fuzzy matching in trees

  appenhancement
  ms609/TreeSearch#189 · Filter by author ms609 opened on May 15, 2025

• Support parallelization in ratchet iterations

  enhancementsearch-optimization
  ms609/TreeSearch#185 · Filter by author ms609 opened on Apr 15, 2025
  1

• Informative message when dataset lacks notes

  ms609/TreeSearch#181 · Filter by author ms609 opened on Feb 14, 2025

• QuartetConcordance() efficiency improvement

  enhancement
  ms609/TreeSearch#177 · Filter by author ms609 opened on Feb 10, 2025

• Reversibility of SPR

  search-optimization
  ms609/TreeSearch#164 · Filter by author teng-gao opened on Dec 6, 2024
  8

• Internal NJ tree moves

  ms609/TreeSearch#163 · Filter by author ms609 opened on Oct 30, 2024

• Find mean of a posterior sample

  ms609/TreeSearch#161 · Filter by author ms609 opened on Sep 13, 2024

• Export consensus tree - not entire sample

  appbugup next
  ms609/TreeSearch#159 · Filter by author ms609 opened on Jul 10, 2024

• Document additive characters

  ms609/TreeSearch#155 · Filter by author ms609 opened on Nov 17, 2023

• Update vignettes to discuss density clustering

  vignettes
  ms609/TreeSearch#154 · Filter by author ms609 opened on Sep 22, 2023

• App: Incorporate optics clustering

  app
  ms609/TreeSearch#153 · Filter by author ms609 opened on Sep 22, 2023

• App: Incorporate HDB clustering

  app
  ms609/TreeSearch#152 · Filter by author ms609 opened on Sep 22, 2023

• App: Visualize only tree on screen

  app
  ms609/TreeSearch#151 · Filter by author ms609 opened on Aug 4, 2023