Issues

• Reporting a vulnerability

  michellab/BioSimSpace#426 · Filter by author igibek opened on Apr 10, 2023

• Are atomtypes meant to be updated when using repartitionHydrogenMass?

  bug
  michellab/BioSimSpace#418 · Filter by author noahharrison64 opened on Feb 13, 2023
  16

• Problem when converting Gro/Top to Rst7

  bug
  michellab/BioSimSpace#404 · Filter by author msuruzhon opened on Dec 16, 2022
  12

• Is it possible to add ions to an already solvated system, without adding any more water molecules?

  michellab/BioSimSpace#400 · Filter by author aniketsh opened on Nov 17, 2022
  4

• Coupling groups in Gromacs

  michellab/BioSimSpace#377 · Filter by author cespos opened on Sep 7, 2022
  2

• Specify ions during system setup

  michellab/BioSimSpace#369 · Filter by author cespos opened on Aug 29, 2022
  15

• Custom expression evaluation for steered Molecular Dynamics

  michellab/BioSimSpace#362 · Filter by author AdeleHardie opened on Jul 15, 2022
  3

• Poor pickling performance on macOS

  bug
  michellab/BioSimSpace#360 · Filter by author lohedges opened on Jul 13, 2022
  3

• Support for intermolecular_interactions

  michellab/BioSimSpace#321 · Filter by author xiki-tempula opened on May 20, 2022
  19

• Issues with Gromacs Input Files

  bug
  michellab/BioSimSpace#289 · Filter by author fjclark opened on Mar 29, 2022
  41

• [TUTORIAL] Funnel metadynamics

  michellab/BioSimSpace#194 · Filter by author lohedges opened on Mar 2, 2021
  96

  

• [TUTORIAL] FEP with perturbation network

  michellab/BioSimSpace#193 · Filter by author lohedges opened on Mar 2, 2021
  13

  

• [TUTORIAL] Steered MD

  michellab/BioSimSpace#192 · Filter by author lohedges opened on Mar 2, 2021
  73

  

• [FEATURE] Support for glycam and ff12

  feature
  michellab/BioSimSpace#172 · Filter by author jmichel80 opened on Dec 22, 2020
  2

  

• ff14SB parameterisation failure

  help wanted
  michellab/BioSimSpace#161 · Filter by author JenkeScheen opened on Oct 27, 2020
  3

• "forcefield" property

  michellab/BioSimSpace#147 · Filter by author SofiaBariami opened on Mar 9, 2020
  10

• Running free energy calculations from already prepared input

  whishlist
  michellab/BioSimSpace#144 · Filter by author jmichel80 opened on Feb 25, 2020
  1

• Migration to the conda-forge or bioconda channel

  whishlist
  michellab/BioSimSpace#143 · Filter by author lohedges opened on Feb 19, 2020
  2

• Failed to read molecules from AMBER files

  michellab/BioSimSpace#137 · Filter by author SofiaBariami opened on Dec 2, 2019
  8

• Absolute hydration free energy calculations support

  whishlist
  michellab/BioSimSpace#116 · Filter by author jmichel80 opened on Sep 5, 2019
  4

• How to preserve information that isn't stored in coordinate/topology files between nodes

  bug
  michellab/BioSimSpace#112 · Filter by author jmichel80 opened on Aug 13, 2019
  7

  

• Improving GROMACS performance

  enhancementhelp wanted
  michellab/BioSimSpace#89 · Filter by author ppxasjsm opened on May 25, 2019
  12

• Virtual sites

  question
  michellab/BioSimSpace#53 · Filter by author jmichel80 opened on Feb 23, 2019
  4